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32 search results found

Nextflow ⭐ 2,447

A DSL for data-driven computational pipelines

Evalai ⭐ 1,621

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Gpu Jupyter ⭐ 618

GPU-Jupyter: Leverage the flexibility of Jupyterlab through the power of your NVIDIA GPU to run your code from Tensorflow and Pytorch in collaborative notebooks on the GPU.

Neurodocker ⭐ 317

Generate custom Docker and Singularity images, and minimize existing containers

Reprozip ⭐ 286

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

Containerit ⭐ 285

Package an R workspace and all dependencies as a Docker container

🐳 Containerize R Markdown documents for continuous reproducibility

Grand Challenge.org ⭐ 156

A platform for end-to-end development of machine learning solutions in biomedical imaging

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Everware ⭐ 111

Everware is about re-useable science, it allows people to jump right in to your research code.

Bacannot ⭐ 85

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

🔬 Empirical CLI

Repro is a library for easily running code from published papers via Docker.

APPIAN is an open-source automated software pipeline for analyzing PET images in conjunction with MRI. The goal of APPIAN is to make PET tracer kinetic data analysis easy for users with moderate computing skills and to facilitate reproducible research.

Experimental eNvironment for OpenStack 🐒

Ck Docker ⭐ 30

Collective Knowledge extension to automate Docker "build","run" and "push" functions and packge CK repositories for collaborative and reproducible research:

Binderhub Deploy ⭐ 27

Deploy a BinderHub from scratch on Microsoft Azure

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Researchcompendium ⭐ 24

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

Docker containers for bioinformatics with a small footprint

Galaksio ⭐ 17

An easy-to-use way for running Galaxy workflows.

Binderhub Deploy Gke ⭐ 11

Automatically deploy a BinderHub to Google Cloud!

Nbreproduce ⭐ 11

Reproduce Jupyter Notebooks inside Docker Containers.

Reproserver ⭐ 10

A web application reproducing ReproZip packages in the cloud.

Sclerotinia 366 ⭐ 9

Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"

Alpine_shrub_experiment ⭐ 8

Australian Alpine shrub warming experiment and field surveys

Rice Awd Shb ⭐ 6

A study of the effects of different water and nitrogen managements on sheath blight of rice.

Cicro Benchmarks ⭐ 5

A C mICRO benchmark suite

Labelreviews ⭐ 5

Reproducible Label Reviews

Ctv Computational Environments ⭐ 5

A CRAN task view for computational environments and reproducibility

A Reproducible Untargeted Metabolomics Data Processing Pipeline

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