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44 search results found

Evalai ⭐ 1,621

☁️ 🚀 📊 📈 Evaluating state of the art in AI

Mlreef ⭐ 1,403

The collaboration workspace for Machine Learning

Container-native task automation engine.

PLynx is a domain agnostic platform for managing reproducible experiments and data-oriented workflows.

Reprozip ⭐ 286

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

🐳 Containerize R Markdown documents for continuous reproducibility

🐳 A Docker image builder for researchers

Docker Devel Env ⭐ 80

Fast, reproducible, and portable software development environments

Git Ghost ⭐ 64

Synchronize your working directory efficiently to a remote place without committing the changes.

Rworkflows ⭐ 50

Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.

Real World Devops With Nix ⭐ 47

An example project for building containers with Nix and deploying them to Kubernetes

Docker Images ⭐ 36

SAT Heritage: a community-driven effort for archiving, building and running more than thousand SAT solvers

Classification ⭐ 35

Catalyst.Classification

Repro is a library for easily running code from published papers via Docker.

Prepare Raspberry Pi 3 & 4 configurations using a virtual machine.

Segmentation ⭐ 27

Catalyst.Segmentation

Binderhub Deploy ⭐ 27

Deploy a BinderHub from scratch on Microsoft Azure

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Ml Project Template ⭐ 25

ML project template facilitating both research and production phases.

Researchcompendium ⭐ 24

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

A proof of concept RNA-Seq pipeline with Nextflow

Docker4seq ⭐ 18

Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers.

🐳 Dugong - Scientific Linux Container

Biosimulators ⭐ 13

Registry of containerized biosimulation tools that support a standard command-line interface

Joint Crab ⭐ 12

Joint Crab paper git repository

Nbreproduce ⭐ 11

Reproduce Jupyter Notebooks inside Docker Containers.

Containerized data analysis pipelines

A collection of Dockerfiles to facilitate reproducibility across computing environments.

Binderhub Deploy Gke ⭐ 11

Automatically deploy a BinderHub to Google Cloud!

Reproducible_bioinformatics ⭐ 10

Workshop material for BioC Asia 2019

Demo Pipeline ⭐ 10

Reproserver ⭐ 10

A web application reproducing ReproZip packages in the cloud.

Reprohack_site ⭐ 9

Reprohack django site

Ci Images ⭐ 9

Insights Engineering Container Images

Holepunch_rladies ⭐ 8

Tools for reproducible research: workflows and containerisation

Simple_workflow ⭐ 7

A very simple, re-executable neuroimaging publication (code)

Docker Reproducibility Example ⭐ 7

Example of providing a docker container for reproducible analyses

Containerinception ⭐ 6

Gerber: Generalized Easy Reproducible Bioinformatics Environment wRapper

Working With Docker ⭐ 6

🐳 Worked minimal examples of workflows with Docker and R

Docker Galaxy Blast ⭐ 6

🐳 Galaxy Docker repository with NCBI Blast tools (Galaxy Blast flavour)

Scratch The Dura ⭐ 6

Begin to learn how to leverage Git, Docker, Jupyter, and various neuroinformatics tools for performing exciting science!

Ctv Computational Environments ⭐ 5

A CRAN task view for computational environments and reproducibility

Labelreviews ⭐ 5

Reproducible Label Reviews

2019 05 14_reproducibility ⭐ 5

🏫 Materials for talk/demonstration on reproducibility in R, given May 14, 2019 at the Utah County RUG

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