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Search results for database sequencing

7 search results found

Artemis ⭐ 191

Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation

Kneaddata ⭐ 78

Quality control tool on metagenomic and metatranscriptomic sequencing data, especially data from microbiome experiments.

Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.

Phenopolis ⭐ 32

An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data

Immunedb ⭐ 19

ImmuneDB - A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data

Plasmidseeker ⭐ 18

A k-mer based program for the identification of known plasmids from whole-genome sequencing reads

Seqspark ⭐ 16

SEQSpark documentation

Mlst_check ⭐ 14

Multilocus sequence typing by blast using the schemes from PubMLST

Miracum Pipe ⭐ 14

Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.

Code repository for the HAYSTAC pipeline

Kodoja: identifying viruses from plant RNA sequencing data

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