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Search results for covid 19 nextflow
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4 search results found
Viralrecon
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101
Assembly and intrahost/low-frequency variant calling for viral samples
Covigator Ngs Pipeline
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15
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
Sc2 Illumina Pipeline
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14
Bioinformatics pipeline for SARS-CoV-2 sequencing at CZ Biohub
Nf Ncov Voc
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5
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
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