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Search results for conda snakemake
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15 search results found
Snakepipes
⭐
359
Customizable workflows based on snakemake and python for the analysis of NGS data
Sunbeam
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157
A robust, extensible metagenomics pipeline
Dropseqpipe
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134
A SingleCell RNASeq pre-processing snakemake workflow
V Pipe
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119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Tibanna
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68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Panoptes
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59
Monitor computational workflows in real time
Assemblycomparator2
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20
🦠📇 Compare prokaryotic genomic assemblies
Quaich
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19
snakemake pipeline for Hi-C post-processing
Kgwasflow
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19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Cascabel
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10
Automated pipeline for amplicon sequence analysis
Riboraptor
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9
Tool for ribo-seq analysis
Snakemake_rnaseq
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8
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Uorf Tools
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6
uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)
Arpeggio
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5
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
Germline_variant_snakemake
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5
Snakemake workflow to call germline variant
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1-15 of 15 search results
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