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Search results for conda genome
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genome
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53 search results found
Snakepipes
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359
Customizable workflows based on snakemake and python for the analysis of NGS data
Metawrap
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320
MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis
Sarek
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299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Atac Seq Pipeline
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290
ENCODE ATAC-seq pipeline
Bactopia
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281
A flexible pipeline for complete analysis of bacterial genomes
Gridss
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212
GRIDSS: the Genomic Rearrangement IDentification Software Suite
Chip Seq Pipeline2
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188
ENCODE ChIP-seq pipeline
Gaas
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188
Genome Assembly and Annotation Service code
Raven
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177
De novo genome assembler for long uncorrected reads
Atac_dnase_pipelines
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135
ATAC-seq and DNase-seq processing pipeline
V Pipe
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119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Vcf Kit
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107
VCF-kit: Assorted utilities for the variant call format
Mcclintock
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83
Meta-pipeline to identify transposable element insertions using next generation sequencing data
Ggd Recipes
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81
conda recipes for genomic data
Catch
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63
A package for designing compact and comprehensive capture probe sets.
Panacota
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60
PANgenome with Annotations, COre identification, Tree and corresponding Alignments
Meteore
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58
Automatic DNA methylation detection from nanopore tools and their consensus model
Pirate
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58
A toolbox for pangenome analysis and threshold evaluation.
Ultra
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53
Long-read splice alignment with high accuracy
Cadd Scripts
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50
CADD scripts release for offline scoring. For more information about CADD, please visit our website
Dchic
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44
dcHiC: Differential compartment analysis for Hi-C datasets
Ncov Tools
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44
Small collection of tools for performing quality control on coronavirus sequencing data and genomes
Microbeannotator
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41
Pipeline for metabolic annotation of microbial genomes
Mentalist
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33
The MLST pipeline developed by the PathOGiST research group
Mtbseq_source
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32
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
Popdel
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32
Population-wide Deletion Calling
Persvade
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27
perSVade: personalized Structural Variation detection
Is_mapper
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26
IS mapping software
Pore C Snakemake
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25
Biohansel
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21
Rapidly subtype microbial genomes using single-nucleotide variant (SNV) subtyping schemes
Spandx
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20
SPANDx - Comparative genomics for next-generation haploid sequence data
Echolocator
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20
Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.
Bactpipe
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17
BACTpipe: An assembly and annotation pipeline for bacterial genomics
Crg2
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15
Research pipeline for exploring clinically relevant genomic variants
Crispritz
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14
Tool package to perform in-silico CRISPR analysis and assessment
Bohra
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12
A pipeline for bioinformatics analysis of bacterial genomes
Nanom6a
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12
Haploconduct
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11
Haplotype-aware genome assembly toolkit
Proteny
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11
A tool to analyze synteny at the protein level.
Mitgard
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11
Mitochondrial Genome Assembly
Dropseqrunner
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10
Lightweight pipeline for processing droplet-based single-cell RNA-seq data
Scorpios
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10
SCORPiOs is a synteny-guided gene tree correction pipeline for clades that have undergone a whole-genome duplication event.
Strainsifter
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10
A straightforward bioinformatic pipeline for detecting a bacterial strain in one or more metagenome(s).
Schavott
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9
Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing
Zga
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6
ZGA prokaryotic genome assembly and annotation pipeline
Blr
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6
Abacat
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6
🥑 A Bacterial genome Comparison and Annotation Toolkit
Remixt
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5
Clone-specific genomic structure estimation in cancer
Focus
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5
FOCUS: An Agile Profiler for Metagenomic Data
Genelift
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5
Gene model transfer from closely related reference genomes using cDNA alignments
Variant_calling_in_cancer_genomes_seminar
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5
Variant Calling in Cancer Genomes
Riboseed
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5
pipeline for using ribosomal flanking regions to improve bacterial genome assembly
Arpeggio
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5
A SnakeMake workflow to analyse whole genome bisulfite sequencing data from allopolyploids.
Related Searches
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Pipeline Genome (479)
Perl Genome (453)
Assembly Genome (449)
Genome Sequencing (438)
Genome Bioinformatics (437)
1-53 of 53 search results
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