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Search results for conda ngs

10 search results found

Snakepipes ⭐ 359

Customizable workflows based on snakemake and python for the analysis of NGS data

V-pipe is a pipeline designed for analysing NGS data of short viral genomes

Mcclintock ⭐ 83

Meta-pipeline to identify transposable element insertions using next generation sequencing data

A package for designing compact and comprehensive capture probe sets.

Grabseqs ⭐ 44

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

Mtbseq_source ⭐ 32

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

Cwl Ngs Workflows Cbb ⭐ 23

A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis

Kgwasflow ⭐ 19

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

Cgat Flow ⭐ 10

cgat-flow repository

Star Seqr ⭐ 9

RNA Fusion Detection and Quantification

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