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9 search results found

Cobrapy ⭐ 414

COBRApy is a package for constraint-based modeling of metabolic networks.

INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

A web application to visualize and edit pathway models

An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!

The official PySCeS project source code repository.

Python Libsbml ⭐ 19

Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.

CBMPy is a Python based platform for constraint based modelling and analysis.

Rust_sbml ⭐ 6

SBML parser + bindings to python

Cd2sbgnml ⭐ 5

Translation between CellDesigner-flavoured SBML and SBGN-ML

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