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Search results for bioinformatics ribosome profiling

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ribosome-profiling x

8 search results found

Ribocode ⭐ 28

release version

Ribotricer ⭐ 26

A tool for accurately detecting actively translating ORFs from Ribo-seq data

Ribotish ⭐ 16

Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data

Piperiboseq ⭐ 10

A comprehensive pipeline for Ribo-seq data analysis

Riboraptor ⭐ 9

Tool for ribo-seq analysis

We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional charact

Uorf Tools ⭐ 6

uORF-Tools are a workflow and a collection of tools for the analysis of 'Upstream Open Reading Frames' (short uORFs)

Ribo Oddr ⭐ 5

Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs

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