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Search results for bioinformatics reproducible research
bioinformatics
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reproducible-research
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18 search results found
Nextflow
⭐
2,447
A DSL for data-driven computational pipelines
Sarek
⭐
299
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Canvasxpress
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282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
Seq2science
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132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Sarek
⭐
126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Panoptes
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59
Monitor computational workflows in real time
Chembl Downloader
⭐
55
Write reproducible code for getting and processing ChEMBL
Genepattern Notebook
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41
Platform for integrating genomic analysis with Jupyter Notebooks.
Ngs Preprocess
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23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Kogia
⭐
22
Docker containers for bioinformatics with a small footprint
Galaksio
⭐
17
An easy-to-use way for running Galaxy workflows.
Snakemake Wrappers
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14
🐍 Snakemake wrappers for bioinformatics.
Chromatographr
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11
Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).
Gluetools
⭐
9
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
16smart
⭐
7
16s rRNA Sequencing Meta-analysis Reproducibility Tool (using mothur).
Openbio.eu
⭐
7
An Open Collaborative Scientific Environment
Reproducible Research Guidelines
⭐
6
Guidelines for accountable and reproducible computational research
Canvasxpress Js
⭐
6
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
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1-18 of 18 search results
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