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8 search results found

Genometools ⭐ 261

GenomeTools genome analysis system.

Mining CRISPRs in Environmental Datasets

Telomeric Identifier ⭐ 73

Identify and find telomeres, or telomeric repeats in a genome.

Crisprcastyper ⭐ 55

CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

Model and predict short DNA sequence features with neural networks

Dnapipete ⭐ 38

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

Exact Tandem Repeat Finder (not a TRF replacement)

Tandem repeat expansion detection or genotyping from long-read alignments

Edgecase ⭐ 13

A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, and for haplotype inference.

Metacrast ⭐ 8

MetaCRAST: reference-guided CRISPR detection in metagenomes

Nf Repeatmasking ⭐ 5

Nextflow workflow for automatic repeat detection, classification and masking

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Python Bioinformatics (1,492)

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