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Search results for bioinformatics pdb
bioinformatics
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pdb
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34 search results found
Biopandas
⭐
673
Working with molecular structures in pandas DataFrames
Biojava
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564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
Plip
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320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
Pdb Tools
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319
A dependency-free cross-platform swiss army knife for PDB files.
P2rank
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193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
Biosyntax
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184
Syntax highlighting for computational biology
Rna Tools
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129
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
Freesasa
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95
C-library for calculating Solvent Accessible Surface Areas
Biostructures.jl
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77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Mitos.jl
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64
Mutual Information Tools for protein Sequence analysis in Julia
Cath Tools
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51
Protein structure comparison tools such as SSAP and SNAP
Libmol
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27
Single Page Web Application for displaying and studying molecular models
Pdb Benchmarks
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26
Benchmarking common tasks on proteins in various languages and packages
Lightdock Python2.7
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20
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
St Speckmol
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18
🧬Streamlit Component for creating Speck molecular structures within Streamlit Web app🚀.
Molstar React
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18
Molstar as a react component
Ramachandraw
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12
Ramachandran plotting tool
Pdbaser
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11
Protein preparation for MD, made faster and easier !
Pose
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10
A bare metal Python library for building and manipulating protein molecular structures
Managing_your_biological_data_with_python_3
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9
<<Managing Your Biological Data with Python>> wirtten in Python 3
Prodigy Lig
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8
Prediction of Protein-Small molecule binding affinities
Patoz
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8
Protein Data Bank (pdb) file parser
Biomolecularstructures.jl
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8
The BiomolecularStructures package provides several Bioinformatics-related modules for Julia.
Surfstamp Public
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7
3D Printer Compatible Molecular Surface Representation (Do not clone! Everything is in the release page!)
Pdb2uniprot
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7
Convert PDB residues to their Uniprot equivalents
Python_scripts
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7
scripts for parsing PDB, fasta, and GO
Bipspi
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7
Partner specific prediction of protein binding sites
Mmtf.jl
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7
A julia package to parse and write MMTF file
Biojava Notebooks
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6
BioJava examples in Jupyter Notebooks
Biomisc
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6
collection of miscellaneous command line bioinformatic scripts
Biodownloader
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6
📦 A Command Line Tool for downloading protein structures, sequences and MSAs
Biopythonramachandran
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6
Hbind
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5
Calculates hydrogen-bond interaction tables for protein-small molecule complexes, based on protein PDB and protonated ligand MOL2 structure input. Raschka et al. (2018) J. Computer-Aided Molec. Design
Rfold
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5
a set of classes and submodules to build, manipulate and analyse three-dimensional protein structures.
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1-34 of 34 search results
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