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Search results for bioinformatics comparative genomics
bioinformatics
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comparative-genomics
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31 search results found
Jcvi
⭐
650
Python library to facilitate genome assembly, annotation, and comparative genomics
Pycirclize
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476
Circular visualization in Python (Circos Plot, Chord Diagram)
Anvio
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396
An analysis and visualization platform for 'omics data
Ppanggolin
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191
Build a partitioned pangenome graph from microbial genomes
Pygenomeviz
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177
A genome visualization python package for comparative genomics
Sibeliaz
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113
A fast whole-genome aligner based on de Bruijn graphs
Ensembl Compara
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46
The Ensembl Compara Perl API and SQL schema
Genera
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41
genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.
Twopaco
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39
A fast constructor of the compressed de Bruijn graph from many genomes
Aniclustermap
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38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Gcv
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32
Federating genomes with love (and synteny derived from functional annotations)
Orthogene
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31
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
Pcg
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28
𝙋𝙝𝙮𝙡𝙤𝙜𝙚𝙣𝙚𝙩𝙞𝙘 𝘾𝙤𝙢𝙥𝙤𝙣𝙚𝙣𝙩 𝙂𝙧𝙖𝙥𝙝 ⸺ Haskell program and libraries for general phylogenetic graph search
Zol
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28
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Cogclassifier
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27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
Kinfin
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24
Taxon-aware analysis of clustered protein sequences
Compare_genomes
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23
A comparative genomics workflow using Nextflow, conda, Julia and R
Gssplayground
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21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
Biokit
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20
a versatile toolkit for processing and analyzing diverse types of sequence data
Mgcplotter
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20
Microbial Genome Circular plotting tool for comparative genomics using Circos
Cgview_comparison_tool
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19
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Amoebae
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14
Workflow for identifying and classifying homologous gene/protein sequences
Compbio Gists
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12
Computational Biology & Bioinformatics Resources
Positive Selection
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10
Scripts and procedures for detecting positively selected genes and codons in primates
Fastoma
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9
FastOMA is a scalable software package to infer orthology relationship.
Accusyn
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9
AccuSyn: An Accurate Web-based Genome Synteny Browser
Gluetools
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9
An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.
Gbkviz
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7
Easy-to-use web application for visualization and comparison of genomes in Genbank file
Fastdtlmapper
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7
Genome-wide gene gain/loss mapping tool using DTL(Duplication-Transfer-Loss) reconciliation method
Donut
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6
Donut: automated Circos visualization of multiple fasta files within a docker image
Teaching Comp Genomics Vis
⭐
6
Comparative Genomics and Visualisation teaching module
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1-31 of 31 search results
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