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Search results for bioinformatics chip seq
bioinformatics
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chip-seq
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29 search results found
Deeptools
⭐
644
Tools to process and analyze deep sequencing data.
Seq2science
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132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Reg Gen
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96
Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.
Dolphinnext
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92
A graphical user interface for distributed data processing of high throughput genomics
Epic
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32
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
Gonetics
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30
Go / Golang Bioinformatics Library
Bioinf Commons
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30
Bioinformatics library in Kotlin
Pygtftk
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30
A python package and a set of shell commands to handle GTF files
Biotoolbox
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27
Tools for querying and analysis of genomic data
Pm4ngs
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21
Project Manager for NGS data analysis
Open_pipelines
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17
Pipelines for NGS data preprocessing by the Bock lab and friends
Marge
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16
API for HOMER in R for Genomic Analysis using Tidy Conventions
Manorm
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14
A robust model for quantitative comparison of ChIP-Seq data sets.
Pybedgraph
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13
A Python package for fast operations on 1-dimensional genomic signal tracks
Cnnpeaks
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13
The ChIP-Seq peak calling algorithm using convolution neural networks
Toolkit
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13
A toolkit for NGS analysis with Python
Workflows
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12
CWL based Bioinformatics Workflows
Ebaii
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12
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
Enrichment_analysis
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10
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
Moca
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9
Ⓜ️ Tool for motif conservation analysis
Genextender
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8
R/Bioconductor package for optimized functional annotation of ChIP-seq data
Span
⭐
7
SPAN Semi-supervised Peak Analyzer
Reli
⭐
7
Regulatory Element Locus Intersection (RELI) Analysis
Ngi Chipseq
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7
Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm
Sargasso
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6
Sargasso disambiguates mixed-species high-throughput sequencing data.
Ssvqc
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5
R package for QC of enrichment based NGS assays. ChIP-seq, cut&run, ATAC-seq, etc.
Bammmotif2
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5
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
Genespark
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5
geneSpark is a bioinformatics software program written in Python and Apache Spark for big data epigenetic histone modification ChIP-seq analysis.
Seqcode
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5
Suite of command-line software for high-performance graphical analysis of ChIP-seq/RNA-seq/ATAC-seq data
Peng Motif
⭐
5
PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.
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1-29 of 29 search results
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