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Sigminer ⭐ 119

🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/

Physicell ⭐ 107

PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!

Palimpsest ⭐ 56

An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.

Cfdnapro ⭐ 20

cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

Cll Chromatin ⭐ 7

Data analysis scripts for Rendeiro et. al, 2016 (doi:10.1038/ncomms11938)

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