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22 search results found

Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science

Primekg ⭐ 269

Precision Medicine Knowledge Graph (PrimeKG)

Single cell perturbation prediction

Deepecg ⭐ 187

ECG classification programs based on ML/DL methods

Proteinflow ⭐ 151

Versatile computational pipeline for processing protein structure data for deep learning applications.

Harmonypy ⭐ 116

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.

Globalbioticinteractions ⭐ 114

Global Biotic Interactions provides access to existing species interaction datasets

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

Biojupies ⭐ 94

Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.

A lightweight and high-performance bioinformatics package in Golang

Mining CRISPRs in Environmental Datasets

Tiledb Vcf ⭐ 79

Efficient variant-call data storage and retrieval library using the TileDB storage library.

Higitclass ⭐ 62

HiGitClass: Keyword-Driven Hierarchical Classification of GitHub Repositories (ICDM'19)

Caleydo - Visualization for Molecular Biology

Statistical approach for removing unwanted variation from multiple single-cell datasets

CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology

Emperor a tool for the analysis and visualization of large microbial ecology datasets

dcHiC: Differential compartment analysis for Hi-C datasets

Chm Eval ⭐ 37

Supercrunch ⭐ 35

A bioinformatics package for creating, filtering, and manipulating supermatrices and phylogenetic datasets using GenBank and/or local sequence data.

Dips Plus ⭐ 34

The Enhanced Database of Interacting Protein Structures for Interface Prediction

Deeprtplus ⭐ 30

Deep (Transfer) Learning for Peptide Retention Time Prediction

Bioinf Commons ⭐ 30

Bioinformatics library in Kotlin

Metaomgraph ⭐ 30

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Mindthegap ⭐ 30

MindTheGap is a SV caller for short read sequencing data dedicated to insertion variants (all sizes and types). It can also be used as a local assembly tool.

Nonpareil ⭐ 29

Estimate metagenomic coverage and sequence diversity

Biomedical Nlp Corpus ⭐ 29

Corpus (datasets) collection about biology and medical NLP.

Causalpath ⭐ 27

A project for exploring differentially active signaling paths related to proteomics datasets

Paccmann_datasets ⭐ 24

pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.github.io/paccmann_datasets/

U Track3d ⭐ 22

Multiple particle tracking in dense 3D particle fields complemented with dynamic regions of interest and trackability inferences for the automated exploration of large volumetric sequences.

Cellguide ⭐ 22

🧭 Navigate single-cell RNA-seq datasets in your web browser.

Public Bioinformatics Datasets ⭐ 20

Publicly available dataset for bioinformatics and integrative -omics research

Omicspls ⭐ 20

R package for High dimensional data analysis and integration with O2PLS!

Echolocator ⭐ 20

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

Helmsman ⭐ 19

highly-efficient & lightweight mutation signature matrix aggregation

Chemrich ⭐ 19

Chemical Similarity Enrichment analysis of metabolomics datasets

Wgs2ncbi ⭐ 18

Toolkit for preparing genomes for submission to NCBI

Prospr is a universal toolbox for protein structure prediction within the HP-model. The Python package is based on a C++ core, which gives Prospr its high performance. The C++ core is made available as a separate zip file to facilitate high-performance computing applications. The package comes with many prediction algorithms and datasets to use.

Clustermap ⭐ 16

ClusterMap is an R package to analyze and compare two or more single cell expression datasets.

Splatter Paper ⭐ 15

Data and analysis for the Splatter paper

GMQL - GenoMetric Query Language

Gene Oracle ⭐ 13

Feature extraction algorithm for genomic data

Wqfm 2020 ⭐ 13

wQFM implementation in Java

Biobtree ⭐ 13

A bioinformatics tool to search, map and retrieve identifiers, keywords and attributes

Nosql Biosets ⭐ 12

index and query scripts for free reference bioinformatics datasets

H2o Curated Data ⭐ 11

Semi-hand curated command-line option data for many CLI programs, geared toward bioinformatics tools. Shell completion scripts are also available.

Web-based visualization of large, high-dimensional datasets.

Biochempantry ⭐ 8

Load bioinformatics datasets into a local database

Chronoclust ⭐ 7

A clustering algorithm that will perform clustering on each of a time-series of discrete datasets, and explicitly track the evolution of clusters over time.

Visualizationqualitycontrol ⭐ 7

Visualization methods for omics dataset quality control

Iscb Diversity ⭐ 7

Analyzing diversity of ISCB keynote speakers & fellows compared to the field of bioinformatics

Clinvar Kaggle ⭐ 6

Scripts related to the ClinVar conflicting classifications dataset on Kaggle

Results of the evaluation of pathway databases using TCGA datasets

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