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🌈Scaffold genome sequence assemblies using linked or long read sequencing data

Awesome 10x Genomics ⭐ 81

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

⛓ Correct misassemblies using linked AND long reads

Spatialtranscriptomics ⭐ 34

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Scaff10x ⭐ 20

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

⛓️ Construct a Physical Map from Linked Reads

Standalone tool and library allowing to work with barcoded linked-reads

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