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21 search results found

Scrnaseq ⭐ 119

A single-cell RNAseq pipeline for 10X genomics data

Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)).

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

Awesome 10x Genomics ⭐ 81

List of tools and resources related to the 10x Genomics GEMCode/Chromium system

Titancna ⭐ 59

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

Spatiallibd ⭐ 53

Code for the spatialLIBD R/Bioconductor package and shiny app

⛓ Correct misassemblies using linked AND long reads

Convert Seurat objects to 10x Genomics Loupe files.

Spatialtranscriptomics ⭐ 34

Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcriptomics.

Humanpilot ⭐ 34

Spatial Transcriptomics human DLPFC pilot study part of the spatialLIBD project

Scaff10x ⭐ 20

Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads

⛓️ Construct a Physical Map from Linked Reads

Pipeline for SpatialTranscriptomics and 10X Visium data

Cellrangerrkit ⭐ 14

Non-official Git repository for R package cellrangerRkit (currently not available elsewhere; I'm not affiliated with 10x)

Scpca Nf ⭐ 11

scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data

Cellatac ⭐ 10

Sanger Cellular Genetics single-cell ATAC-seq pipeline.

Standalone tool and library allowing to work with barcoded linked-reads

Pancreas_ductal_scrnaseq ⭐ 9

The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche

Scrattch.io ⭐ 7

Functions for handling RNA-seq files and formats as input and output for scrattch functions.

Spatialdata_xenium_explorer ⭐ 7

Converting any SpatialData object into files that can be open by the Xenium Explorer

Awesome Linked Reads ⭐ 6

Collection of tools and resources for linked-reads

Related Searches

Bioinformatics 10xgenomics (12)

Genomics 10xgenomics (11)

R 10xgenomics (10)

Assembly 10xgenomics (6)

Scrna Seq 10xgenomics (6)

10xgenomics Linked Reads (6)

Python 10xgenomics (6)

Genome 10xgenomics (5)

C Plus Plus 10xgenomics (5)

10xgenomics Cite Seq (5)

1-21 of 21 search results

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