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133 search results found

Simple matching of HTS samples based on HLA typing

💯 Snakemake-based amplicon processing protocol for 16S and ITS sequences.

Ng Meta Profiler ⭐ 10

Profiler for metagenomics based on NGLess

Containers Rules Manuscript ⭐ 10

Recommendations to contenarized your bioinformatics software

Neptune: Genomic Signature Discovery

Version 2 of the PROSIC caller for somatic variants.

Star Seqr ⭐ 9

RNA Fusion Detection and Quantification

Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

Bio598_tutorial ⭐ 8

A hands-on tutorial introducing users to reproducible genome reassembly and variant calling

Gedmatch Tools ⭐ 8

Tools and Python API for GEDMatch Genesis (https://genesis.gedmatch.com)

BioContainers Documentation.

Bcbio Conda ⭐ 7

Deprecated conda recipes for bcbio python code and dependencies -- migrated to bioconda

Mzml2isa Galaxy ⭐ 7

mzml2isa for galaxy

Bioconda Primedrpa ⭐ 7

Carnac Lr ⭐ 7

For more details about Mobster please see

Disty McMatrixface - compute a distance matrix from a core genome alignment file

Tangle Resolution ⭐ 6

Python package for processing direct-infusion mass spectrometry-based metabolomics and lipidomics data

Cellrank_notebooks ⭐ 6

Tutorials and examples for CellRank.

Pathwaymatcher_dev ⭐ 6

PathwayMatcher is a free, open-source software to search for pathways related to a list of proteins in Reactome. This repository is the development repository. For the latest version see: https://github.com/PathwayAnalysisPlatform/Pathway

Quasitools ⭐ 6

Quasitools is a collection of tools for analysing viral quasispecies data.

🎉 CNVetti – robust, efficient, and versatile clinical CNV calling from HTS data

Structtoolbox ⭐ 5

R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox

A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data

Bioconda Tutorial ⭐ 5

A quick overview of how to use Bioconda, and create recipes

Protgraph ⭐ 5

ProtGraph - A Graph-Generator for Proteins

Visualize HMMs, CMs and their comparisons

Czi Conda Forge Mgmt ⭐ 5

🚀 Top level project management for conda-forge CZI grant

A python tool to detect internal tandem duplication with robust variant allele frequency estimation

FOCUS: An Agile Profiler for Metagenomic Data

Pyomeroupload ⭐ 5

Project for uploading local file structure into OMERO database

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