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Search results for bam files
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22 search results found
Gw
⭐
118
Genome browser and variant annotation
Learning_bam_file
⭐
103
Learning the Sequence Alignment/Map format
Msisensor
⭐
99
microsatellite instability detection using tumor only or paired tumor-normal data
Altanalyze
⭐
72
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Bioalignments.jl
⭐
51
Sequence alignment tools
Pytabix
⭐
51
📇 Retrieve data in genomic intervals with a Python interface for tabix.
Needlestack
⭐
39
Multi-sample somatic variant caller
Covtobed
⭐
36
⛰ covtobed | Convert the coverage track from a BAM file into a BED file
Picardmetrics
⭐
34
🚦 Run Picard on BAM files and collate 90 metrics into one file.
Gonetics
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30
Go / Golang Bioinformatics Library
Portcullis
⭐
28
Splice junction analysis and filtering from BAM files
Xam.jl
⭐
24
Parse and process SAM and BAM formatted files
Phat
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17
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Ribotish
⭐
16
Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
Vsnp
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13
vSNP -- validate SNPs
Angsd Wrapper
⭐
13
Utilities for analyzing next generation sequencing data.
Readdatastores.jl
⭐
10
Datastores for reads, not your papa's FASTQ files.
Somaticfreq
⭐
8
knowledge-based genotyping of cancer hotspots from the tumor BAM files
Bamscope
⭐
7
A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments.
Bamsplit
⭐
7
Split a BAM file by haplotype support
Sequencing_tools
⭐
6
A python package storing different tools for different NGS operations
Bamdash
⭐
6
create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
Related Searches
Bioinformatics Bam Files (14)
Fastq Bam Files (8)
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1-22 of 22 search results
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