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Search results for bacterial genomes
bacterial-genomes
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22 search results found
Prokka
⭐
415
⚡ ♒ Rapid prokaryotic genome annotation
Bakta
⭐
365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Bactopia
⭐
281
A flexible pipeline for complete analysis of bacterial genomes
Integron_finder
⭐
50
Bioinformatics tool to find integrons in bacterial genomes
Bacass
⭐
47
Simple bacterial assembly and annotation pipeline
Sketchy
⭐
35
Genomic neighbor typing of bacterial pathogens using MinHash 🐀
Cgview
⭐
30
CGView is a Java package for generating high-quality, zoomable maps of circular genomes.
Strainscan
⭐
30
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
Ska
⭐
29
Split Kmer Analysis
Stringmlst
⭐
27
Fast k-mer based tool for multi locus sequence typing (MLST)
Phist
⭐
22
Phage-Host Interaction Search Tool
Promotech
⭐
21
Machine-learning-based general bacterial promoter prediction tool.
Cgview_comparison_tool
⭐
19
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
Genemates
⭐
16
An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
Scaffold_builder
⭐
12
Combining de novo and reference-guided assembly with Scaffold_builder
Magphi
⭐
10
Tool intended to pull out sequences and annotations between insertion sites specified by the user.
Bacterial_wgs_training
⭐
9
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
Gan
⭐
7
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
Bactprep
⭐
6
Flexible workflow designed for bacterial WGS analyses (annotation, core/pan-genome reconstruction, phylogeny)
Nanoflow
⭐
5
Bioinformatics pipeline for nanopore sequencing data
Evo2sim
⭐
5
Digital evolution model dedicated to bacterial in silico experimental evolution.
Taranis
⭐
5
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
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1-22 of 22 search results
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