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20 search results found

Hic_tools ⭐ 454

A collection of tools for Hi-C data analysis

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

A cool place to store your Hi-C

Accurate and flexible loops calling tool for 3D genomic data.

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph

A fast and efficient tool for converting chromatin interaction data between genome assemblies

Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.

nuclear compartments, subcompartments, nuclear organization, Hi-C, autoencoder

multiway chromatin interaction, 3D genome, single-nucleus

Genomedisco ⭐ 18

Software for comparing contact maps from HiC, CaptureC and other 3D genome data.

Genome Blender ⭐ 13

Scripts to create cartoons of 3D genomes

7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs

Visual exploration of large genome interaction matrices with interactive small multiples.

Hic Spector ⭐ 8

Spectral and reproducibility analysis of Hi-C contact maps

Best Labs Of 3d Genome ⭐ 8

Data and the co-authored network I extracted for lab selection in 3D genome research field

3d Genome Builder ⭐ 8

3DGB is a workflow to build 3D models of genomes from HiC data

Fast Higashi ⭐ 6

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition

single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment

Diffdomain ⭐ 5

DiffDomain is a statistically sound method for detecting differential TADs between conditions

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