Awesome Open Source

Programming Languages

Search results for protein

1,092 search results found

Raptorx_property_fast ⭐ 9

RaptorX-Property: a Standalone Package for Protein Structure Property Prediction

Learning structural motif representations for efficient protein structure search

Orf Rater ⭐ 9

Regression-based annotation of protein-coding sequences from ribosome profiling data

Fungal Genome Mapping Pipeline

Vaxdesign ⭐ 9

A script that computationally designs a vaccine

Protein_gan ⭐ 9

Implementation of "Generative Modeling for Protein Structures" by Namrata Anand and Po-Ssu Huang

Predicting ncRNA-protein interaction using high-level features based on deep learning

Stringapp ⭐ 9

Cytoscape interface to STRING and STITCH

A DDG benchmark capture containing the benchmark dataset and benchmarked protocol captures.

Paccmann_sarscov2 ⭐ 9

Code for paper on automation of discovery and synthesis of targeted molecules: https://iopscience.iop.org/article/10.1088/2632-21

Identifying ViRal and Circular content in metAgenomes

A Bio2BEL package for integrating pathway-related information from KEGG in BEL

Pygenprop ⭐ 9

A python library for programmatic usage of EBI InterPro Genome Properties.

Pocket2drug ⭐ 9

Pytorch implementation of Pocket2Drug: a generative deep learning model to predict binding drugs for ligand-binding sites.

Comparative Data Analysis Ontology - A formalization of concepts and relations relevant to evolutionary comparative analysis

Bm5 Clean ⭐ 9

Docking benchmark 5 - cleaned and ready to use for HADDOCK

Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow

A convolutional neural network model for relation extraction.

Proteingraphml ⭐ 9

Protein Graph in Python for MetaPath-ML and more.

R package for microbial pangenomics

Inmembrane ⭐ 9

Single Cell Pipeline ⭐ 9

an easy to use implementation of the NCBI taxonomy database for daily use

Map_viruses ⭐ 9

Align short reads against viral genomes in protein space

Deep learning based prediction of pi-helices in protein sequences

Hivepanelexplorer ⭐ 9

An interactive and explorative visualization tool in D3 based on hive plots built for complex networks.

Protein Folding ⭐ 8

Protein structure prediction using optimization methods from the field of machine learning

Protac_ternary ⭐ 8

An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics

Simple code generator

Membrane protein builder and parameterizer

Potatodown ⭐ 8

A potato-based visual reference for Markdown

A Deep Architecture for Synapse Detection in Multiplexed Fluorescence Images

Hpa Competition Solutions ⭐ 8

Team original solutions for the Human Protein Atlas image classification competition

Protein Data Bank (pdb) file parser

a customizable protein feature visualization tool

kaamer - protein identification based on amino acid kmers

Prodigy Lig ⭐ 8

Prediction of Protein-Small molecule binding affinities

Prot Bo 0 ⭐ 8

💊 Guiding directed protein evolution with Bayesian Optimization 💊

D2P2 website and data munging code.

Genemark Ep Plus ⭐ 8

GeneMark-EP and -EP+: automatic eukaryotic gene prediction supported by spliced aligned proteins

Improving Protein Fold Recognition by Extracting Fold-specific Features from Predicted Residue-residue Contacts

ORF prediction of de novo transcriptome assemblies

Multiphate2 ⭐ 8

multiPhATE with comparative genomics

Strucmotif Search ⭐ 8

Real-time structure motif searching in protein 3D structures using an inverted index strategy

Protein structural disorder prediction

Multi-Atom Structure/Selection Toolkit with Interaction Capabilities

Proteindescriptor ⭐ 8

a protein descriptor for site prediction

[NeurIPS 2019] LOIS: Learning to Optimize In Swarms, guided by posterior estimation

A simple interface to the Human Protein Atlas

Prion-Like Amino Acid Composition

Protein_seq_des ⭐ 8

Code for our paper "Protein sequence design with a learned potential"

PointNet for Deep Rank: protein-protein interaction scoring using neural networks

Workflow Testing ⭐ 8

Automated testing of workflows against Galaxy

Protein Secondary Structure Prediction ⭐ 8

PyTorch implementations of protein secondary structure prediction on CB513.

Mulocdeep ⭐ 8

Predicting the impact of mutations on protein function

Kgsim Benchmark ⭐ 8

WhatsGNU: a tool for identifying proteomic novelty

sismonr - Simulation of In Silico Multi-Omic Networks R package

Supermatrix ⭐ 8

scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms

An implementation of Knowledge-aware attention networks (KAN) for protein-protein extraction task

Js Graph Lib Comparison ⭐ 8

A comparison of JS graph libs

Ms1searchpy ⭐ 8

Foldingathome ⭐ 8

Fighting COVID-19 leveraging the FOLDING@HOME project

Perchlorate Metagenome 2018 ⭐ 8

Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and John D. Coates. (2018) Genome-resolved metagenomics identifies genetic mobility, metabolic interactions, and unexpected diversity in perchlorate-reducing communities.

✅❌Evolutionary protein-protein interface classifier

AutoDock CrankPep for peptide and disordered protein docking

A tensorflow implementation of self attentive graph embedding (SAGE) in WWW 2019

The MHC Restriction Ontology

My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/b

De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk

Public_notebooks ⭐ 8

Repository of Jupyter Notebooks created by the Bio2Byte group

Parallelized Open Babel & Autodock suite Pipeline

Most up to date PathFX code

A 3D-based method to annotate resistance genes

Spatially-resolved Transcriptomics via Epitope Anchoring

Struct2graph ⭐ 8

A PyTorch implementation of GCN with mutual attention for protein-protein interaction prediction

Simple Membrane Protein Analysis ⭐ 7

This is a short tutorial showing how to use both VMD and MDAnalysis to analyse a molecular dynamics simulation of a membrane protein.

Functional Dark Side.github.io ⭐ 7

Phage Host Prediction ⭐ 7

Published in PLOS ONE. We show that using embeddings of receptor-binding proteins presents improvements over handcrafted genomic and protein sequence features for phage-host interaction prediction — with the highest performance obtained using the transformer-based protein language model ProtT5

Invasive_salmonella ⭐ 7

Data and code to accompany our paper on identifying patterns of gene degradation associated with invasiveness in Salmonella

SCALLOP-INF analysis

Rcsb Saguaro App ⭐ 7

RCSB Saguaro 1D Feature Viewer Web App

Deepdtnet ⭐ 7

Cancer Suppressor Gene Deep Learning ⭐ 7

Cancer Suppressor Gene and Oncogene Prediction using Deep Learning (CNN)

Aa_subtypes ⭐ 7

Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape

DIseAse MODule identification algorithim

Python package for analyzing hydroxyl-radical footprinting experiments of DNA-protein complexes

Protein_solubility ⭐ 7

Fantastic_databases_and_where_to_find_them ⭐ 7

Repository of databases for omic data

Interactive Protein Sequence VIsualization/Viewer - Interactive Circos

Darkhorse2 ⭐ 7

DarkHorse2 source code

Related Searches

Python Protein (1,344)

Jupyter Notebook Protein (296)

Protein Pdb (285)

Bioinformatics Protein (282)

R Protein (245)

Interaction Protein (204)

701-800 of 1,092 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.