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Search results for rna seq
rna-seq
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386 search results found
Iris
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17
IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
Open_pipelines
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17
Pipelines for NGS data preprocessing by the Bock lab and friends
Orna
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17
Fast in-silico normalization algorithm for NGS data
Rna Seq Pop
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17
Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data
Rpanglaodb
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17
An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.
Pipernaseq
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16
A comprehensive pipeline for RNAseq data analysis
Cd4 Csaw
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15
Reproducible reanalysis of a combined ChIP-Seq & RNA-Seq data set
Pyflow Rnaseq
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15
RNAseq pipeline based on snakemake
Pigx
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15
Pipelines in genomics
Dropclust
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15
Version 2.1.0 released
Velodyn
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15
Dynamical systems methods for RNA velocity analysis
Splatter Paper
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15
Data and analysis for the Splatter paper
Parser
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15
parseR: Pipeline for rna-seq analysis in R
Subread_to_dexseq
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15
A way to use FeatureCounts output for DEXSeq
Msisensor Rna
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15
MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data
Dseqr
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15
single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.
Rnaseqmut
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14
RNA-Seq Mutation Detection
Gdc Rnaseq Tool
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14
Tool to download/merge RNASeq data from the GDC Portal in matrices identified by TCGA barcode
Eagle
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14
An R package for detecting Gene-by-Environment (GxE) interaction effects on the transcriptome using Allele Specific Expression quantified from RNA-seq
Uncurl_python
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14
UNCURL is a tool for single cell RNA-seq data analysis.
Gcen
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14
GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation
Ngs_data_analysis_course
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14
Pegasas
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14
Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)
Ularcirc
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14
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
Rnaseqreadsimulator
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14
RNASeqReadSimulator is a simple tool to generate simulated single-end or paired-end RNA-Seq reads.
Pavfinder
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14
🔍 Post Assembly Variants Finder
Transindel
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13
Indel caller for DNA-seq or RNA-seq
Rnaseq
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13
RNA-seq, QC and differential analysis pipeline
Apaeval
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13
Community effort to evaluate computational methods for the detection and quantification of poly(A) sites and estimating their differential usage across RNA-seq samples
Lr Splitpipe
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13
Demultiplexing and debarcoding tool designed for LR-Split-seq data.
Ymp
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13
Flexible omics pipeline
Topconfects
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13
TOP results by CONfident efFECT Sizes.
Toolkit
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13
A toolkit for NGS analysis with Python
Gseabenchmarker
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13
Reproducible GSEA Benchmarking
Transpi
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13
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
Scmut
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13
Gene Oracle
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13
Feature extraction algorithm for genomic data
Bgeedb_r
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13
Source code of the R packge BgeeDB to use data from the Bgee database
Workflows
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12
CWL based Bioinformatics Workflows
Chimerate
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12
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
Workshop Ngsintro
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12
Workshop • Intro to Bioinformatics using NGS data • 5 days
Recount Website
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12
Code for the Recount project
Ebaii
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12
Supports de cours de l'Ecole de Bioinformatique Aviesan - IFB - Inserm "Initiation au traitement des données de génomique obtenues par séquençage à haut débit"
Seq Pipeline
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12
Workspace for data science projects and NGS pipelines. Contains RStudio, Jupyter Notebook, VSCode and file manager. Can connect to Tailscale network to bypass firewalls.
Npdr
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12
NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
Rna Seq In The Cloud
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12
An Easy to Use Analysis System for All Human Public bulk RNAseq Data!
Rcount
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12
Rcount: simple and flexible RNA-Seq read counting
Circompara
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12
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Efp Seq_browser
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12
An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.
Atacr
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12
Analysing Capture Seq Count Data
Dekupl
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11
Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.
Phenotypexpression
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11
Subclassification of disease states based on the intersection of literature and expression
Archive Ruvseq
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11
Archived version of RUVSeq
Sci Plex
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11
repository containing analysis scripts and auxiliary files
Rna Combine
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11
RNA-seq data comprehensive data analysis toolbox
Xpresspipe
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11
An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
Oncofuse
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11
Predicting oncogenic potential of gene fusions
Isonclust2
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11
A tool for de novo clustering of long transcriptomic reads
Hcir
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11
R package for RNA-seq workflows at HCI
Rnaseq Introduction Training
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11
Webpage of the "Introduction to RNA-Seq: From quality control to pathway analysis - streamed" SIB course.
Spotclean
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11
R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
Rpkm_rnaseq_count
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11
RPKM for RNASeq counts
Couplednmf
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11
Coupled clustering of single cell genomic data
Ursm
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10
A Unified RNA Sequencing Model (URSM) for joint analysis of single cell and bulk RNA-seq data.
Modulome Workflow
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10
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
Dl Based Tumor Classification
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10
Deep Learning Based Tumor Type Classification Using Gene Expression Data
Shark
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10
Mapping-free software for fishing relevant reads in an RNA-Seq sample
Nasqar
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10
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
Tostadas
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10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Hermes
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10
Preprocessing, analyzing, and reporting of RNA-seq data
Bioinformatics
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10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Enrichment_analysis
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10
A Snakemake workflow for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, and GSEApy.
Piperiboseq
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10
A comprehensive pipeline for Ribo-seq data analysis
Oyster_river_protocol
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10
Official Repository of the Oyster River Protocol for Transcriptome Assembly
Gear
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10
The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
Geneexpressionaging
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10
Gene expression viewer template
Tag Based_rnaseq
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10
Cost-efficient genome-wide gene expression profiling
Tbro
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10
Visualization and management of denovo transcriptomes
Ancetran
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9
AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data
Pyreqtl
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9
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
Arpir
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9
Automatic RNA-Seq Pipelines with Interactive Report
Brainseq_phase2
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9
BrainSeq Phase II project lead by LIBD for the BrainSeq Consortium
Umitools
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9
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
Regionreport
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9
Generate HTML report for a set of genomic regions or DESeq2/edgeR results
Rnaseq Pipeline
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9
RNASeq-Pipeline for Quantification and Enrichment Analysis
Star Seqr
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9
RNA Fusion Detection and Quantification
Trackcluster
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9
An analysis pipeline for Nanopore direct-RNA sequencing
Spatial
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9
Single-Cell Spatial Explorer
Sequenza
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8
Workflow for Sequenza, cellularity and ploidy
Captus
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8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
Exseek
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8
exRNA Biomarker Discovery for Liquid Biopsy
Debpeak
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8
DEbPeak - Analyze and integrate multi-omics to unravel the regulation of gene expression.
Deseq2shiny
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8
a web-based R shiny application that wraps DESeq2 R package
Rnaseq Cb321
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8
June 5, 2019
Kakapo
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8
A tool to extract and annotate genes from raw RNA-seq reads.
Fatecompass
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8
Splicelauncher
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8
RNAseq pipeline for alternative splicing junctions
Rrmsanalyzer
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8
A set of easy-to-use functions to analyze end read count data of RiboMethSeq (RNA 2'Ome)
Mtd
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8
MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
Rna Seek
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8
A comprehensive quality-control and quantification RNA-seq pipeline
Related Searches
R Rna Seq (194)
Python Rna Seq (178)
Bioinformatics Rna Seq (141)
Pipeline Rna Seq (111)
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