Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for genetics
genetics
x
193 search results found
Bcfanno
⭐
12
A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file
Ldserver
⭐
12
Fast API server for calculating linkage disequilibrium
Region Plot
⭐
12
A tool to plot significant regions of GWAS
Terapca
⭐
12
TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the robustness of subspace iteration with the power of randomization.
Seave
⭐
12
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling fr
Timesweeper
⭐
12
Python package for detecting positive selective sweeps using time-series genomics sampling data.
Biomarkers
⭐
11
Genetics of blood and urine biomarkers in the UK Biobank
Bigtop
⭐
11
A Manhattan plot in colorful virtual reality that adds frequency expression
Libflagstats
⭐
11
Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
Germinate Vue
⭐
11
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
Sushie
⭐
11
Software to perform multi-ancestry SNP fine-mapping on molecular data
R
⭐
11
R packages
Quetzal Coatl
⭐
10
A toolbox for C++ devs wanting to build geospatial population genetics simulators !
Hat
⭐
10
HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
Gpmap
⭐
10
A Python API for managing genotype-phenotype map data
Positive Selection
⭐
10
Scripts and procedures for detecting positively selected genes and codons in primates
Banns
⭐
10
Code and simulations using Biologically Annotated Neural Networks (BANNs)
Rate
⭐
10
Code for Variable Selection in Black Box Methods with RelATive cEntrality (RATE) Measures
Bedmatrix
⭐
10
A matrix-like wrapper around PLINK .bed files
Algebra
⭐
10
A Boolean Algebra for Genetic Variants
Tostadas
⭐
10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Alphabeta
⭐
10
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Epicompare
⭐
10
Comparison, benchmarking & QC of epigenetic datasets
Sequence Database Curator
⭐
10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Genetictree
⭐
10
Constructing decision trees with genetic algorithm with a scikit-learn inspired API
Snpnet
⭐
9
snpnet - Efficient Lasso Solver for Large-scale genetic variant data
Legit
⭐
9
An R package for the Latent Environmental & Genetic InTeraction (LEGIT) model
Nimpress
⭐
9
Polygenic score calculation from VCF in Nim.
Flybase Controlled Vocabulary
⭐
9
The home of the FlyBase miscellaneous ontologies - incorporating the Drosophila Phenotype Ontology (see also FlyBase/drosophila-phenotype-ontology)
Cvrp
⭐
9
This repository contains algorithms in C++ to solve the Capacitated Vehicle Routing Problem (cvrp).
Bwgs
⭐
9
2024 BreedWheat Genomic Selection pipeline
Accusyn
⭐
9
AccuSyn: An Accurate Web-based Genome Synteny Browser
Allelefrequencies
⭐
9
📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
Seq Collection
⭐
9
Mapit
⭐
9
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
Genomics.ai
⭐
9
a web application to annotate and visualise single-cell sequencing data using neural networks
Open Genes Api
⭐
9
Open Genes API provides access to research data collected for the genes associated with aging
Variantconvert
⭐
9
A customizable genetic variants file format converter.
Atelier Prediction Genomique
⭐
8
Atelier de prédiction et sélection génomique.
Macie
⭐
8
Multi-dimensional Annotation Class Integrative Estimation
Biotech Resources
⭐
8
Resources for learning Biotechnology, Biology, Synthetic Biology, Genomic and Bioinformatic
Statgengwas
⭐
8
See https://biometris.github.io/statgenGWAS for a full description
Bakr
⭐
8
Code and Simulations using Bayesian Approximate Kernel Regression (BAKR)
Spiril
⭐
8
Rust library for genetic algorithms
Cate
⭐
8
A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests on large scale genomic data.
Variantcallformat.jl
⭐
8
Read and write VCF and BCF files
Open Genes Frontend
⭐
8
Open Genes is a database of human genes associated with aging and lifespan.
S Ldxr
⭐
7
Stratified squared trans-ethnic genetic correlation
Nhc
⭐
7
NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
Spagefinder
⭐
7
Computational approach to identify Survival associated Pairwise Gene Expression states.
Msp
⭐
7
Genetic and our algorithm for Multiprocessor Scheduling Problem
Intermediate
⭐
7
small R utility for mediation analysis
River
⭐
7
R package for RIVER (RNA-Informed Variant Effect on Regulation)
Labrat
⭐
7
A basic science lab framework aimed at reproducibility and lab management.
Plantbreedgame
⭐
7
A serious game to teach plant selective breeding.
Uorganisms
⭐
7
Python micro:organisms on the BBC micro:bit
Hgvs Rs
⭐
6
A port of biocommons/hgvs to the Rust programming language
Genetic Rocket
⭐
6
🤖 Genetic rocket artificial intelligence.
Jenetics
⭐
6
Genetic Algorithm Framework in JS
Mtseeker
⭐
6
mitochondrial variant analysis tools
Vcfppr
⭐
6
Rapid processing of VCF/BCF files in R!
Slime Mould Algorithm A New Method For Stochastic Optimization
⭐
6
In this paper, a new stochastic optimizer, which is called slime mould algorithm (SMA), is proposed based upon the oscillation mode of slime mould in nature. The proposed SMA has several new features with a unique mathematical model that uses adaptive weights to simulate the process of producing positive and negative feedback of the propagation wave of slime mould based on bio-oscillator to form the optimal path for connecting food with excellent exploratory ability and exploitation propensity.
Simulategp
⭐
6
R package to simulate genotype-phenotype maps and analyse them
Banding Pattern Extraction
⭐
6
Banding pattern extraction, and banding pattern segmentation mask generation for stained banded chromosome images.
Kalis
⭐
6
kalis: High Performance Li & Stephens Local Ancestry Inference
Pp
⭐
6
Smart and Accurate Polishing of Phase Haplotypes Integrating Read Enhancements (SAPPHIRE)
Genome To Sqlite
⭐
6
Import your genome into a SQLite database
Statgengxe
⭐
6
See https://biometris.github.io/statgenGxE for a full description
Impute
⭐
6
Automated imputation pipeline for arbitrary dataset and reference panels.
Ctlmapping
⭐
5
Correlated Trait Locus (CTL) mapping
Aces
⭐
5
ACES is a workflow to query small sequences in a large set of genomes. It provides several outputs including BLAST results, a multiple sequence alignment file, a graphical fragment assembly file, and a phylogenetic tree file.
Quetzal Eggs
⭐
5
Simulators of spatial genetic diversity: for non-programmers and researchers!
Pdvcf
⭐
5
Allows one to manipulate a VCF as a MultiIndex Pandas DataFrame
Antsim
⭐
5
A fun project to test some pathfinding and genetic algorithms
Notebooks Nonlinear High Order Epistasis
⭐
5
Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"
Prs
⭐
5
Toolkit for the efficient construction and analysis of polygenic risk scores in R.
Simple
⭐
5
Vase
⭐
5
Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.
Gslc
⭐
5
Genotype Specification Language command-line compiler application.
Naturalshift
⭐
5
An artificial-intelligence based engine to compute workshifts
Genetic Mapper
⭐
5
SVG Genetic Map Drawer
Dddnoncoding2017
⭐
5
Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).
Varfish Docker Compose
⭐
5
Setup VarFish as using Docker Compose
Easygen
⭐
5
A suite of packages for quantitative genetics analysis and more!
Metadome
⭐
5
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
Annonars
⭐
5
Genome annotation based on Rust and RocksDB
Varfish Annotator
⭐
5
(Legacy) Annotate variants for import into VarFish server.
Bphunter
⭐
5
Genome-wide detection of human variants that disrupt intronic branchpoints
Plot Vcf
⭐
5
visual analysis of your VCF files
Recimap
⭐
5
Recimap (a reciprocal mapping tool) was developed as a bioinformatics command-line tool/pipeline to find rearrangements breakpoints between two closely related genomes.
Rdna Nexus
⭐
5
Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench
Pigy Genetics
⭐
5
A simple genetics game using PIGY tokens on Cardano.
Wikigenomesbase
⭐
5
A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging the taxonomic, genetic and functional data that has been loaded to Wikidata.org by the Gene Wiki Project.
101-193 of 193 search results
< Previous
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.