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Search results for bioinformatics pipeline
bioinformatics-pipeline
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181 search results found
Bohra
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12
A pipeline for bioinformatics analysis of bacterial genomes
Region Plot
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12
A tool to plot significant regions of GWAS
Bgi Full Length Rna Analysis Pipeline
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12
Full-Length RNA Analysis pipeline developted by BGI RD group.
Workflows
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12
CWL based Bioinformatics Workflows
Tf Prioritizer
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12
Bioinformatics pipeline to identify differentially active transcription factors between conditions using expression and epigenetic data
Circompara
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12
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Watchdog
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12
Workflow management system for the automated and distributed analysis of large-scale experimental data.
Living Oceans
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11
🌊 Robust workflows for gathering data about your local ocean.
Chipimputation
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11
Genotype Imputation Pipeline for H3Africa
Introduction_to_gwas
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11
https://filippob.github.io/introduction_to_gwas/
Lodestone
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11
Mycobacterial pipeline
Tools Artbio
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11
Collection of galaxy tools developed by the artbio-platform at the IBPS (Institut de Biologie Paris-Seine)
Guidock
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11
Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)
Pipecov
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10
This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid-19 with a contribution of GBP 20 million (https://www.gov.uk/government/news/uk-launches-wh genome-sequence-alliance-to-map-spread-of-coronavi
Positive Selection
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10
Scripts and procedures for detecting positively selected genes and codons in primates
Guidescan Cli
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10
A gRNA database generation tool.
Bioinformatics Toolbox
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10
Docker container for bioinformatics tools and pipelines
Deepchain Apps
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10
A library for deploying App on deepchain.bio
Blastviewer
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10
This package contains the BLAST Viewer Tool.
Bioinformatics
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10
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common DNA and RNA sequence analysis methods.
Nsearch
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10
Next-Generation Sequencing (NGS) Data Processing Tool & Library
Neuroexpressoanalysis
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10
Paper at: http://www.eneuro.org/content/4/6/ENEURO.0212-17.2
Protein Feature Extraction
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10
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
Pygmql
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9
Python Library for data analysis based on GMQL
Riboraptor
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9
Tool for ribo-seq analysis
Egsea
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9
This package implements the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing.
Runjob
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9
runjob is a program for managing a group of related jobs running on a compute cluster
Metabar
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9
metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.
Modular Assembly Hs18
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9
Mix and match modular genome assembler components
Bioix
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9
PCA on Genotypes
Hic Inspector
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8
HiC-inspector, a bioinformatics pipeline to facilitate the analysis of HiC dataset.
Metacrast
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8
MetaCRAST: reference-guided CRISPR detection in metagenomes
Repeatcraftp
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8
meta-pipeline for repetitive element de-fragmentation and annotation
Blss
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8
A suite of unique bioinformatics tools for the brave explorer.
F5n
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8
Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com
Consensustme
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8
ConsensusTME Gene Sets and R Script
Scanpav
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7
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
Fish_processing
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7
Repository to automatically process Fluorescence In Situ Hybridization (FISH) images using Cellpose and BIG-FISH (FISH-quant v2).
Kive
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7
Archival and automation of bioinformatic pipelines and data
Ngi Chipseq
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7
Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm
Mgp1000
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7
Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes
Docs
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7
Documentation on St. Jude Cloud.
Sentieon Dnascope Ml
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7
Sentieon DNAscope + Machine Learning Model
Biopipen
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7
A set of processes/pipelines for bioinformatics
Tidycwl
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7
Tidy Common Workflow Language Tools and Workflows
Mapp
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7
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
Albatradis
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7
Comparative TraDIS analysis
Shesmu
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7
Decision-driven action launching system
Nf Workflows
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7
Repository of Nextflow+BioContainers workflows
Gb Easy
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6
Bioinformatics pipeline to process genotyping-by-sequencing (GBS) data
Hybkit
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6
Toolkit for analysis of ".hyb" format nucleotide sequence data from chimeric RNA experiments.
Reproducible Research Guidelines
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6
Guidelines for accountable and reproducible computational research
Configbuilder Nf
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6
Nextflow config builder scripts for supported HPC infrastructures.
Kas Analyzer
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6
New computational framework to process and analyze KAS-seq and spKAS-seq data.
Pjm
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5
A simple job manager for PBS (Portable Batch System)
Celseq2
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5
Generate the UMI count matrix from CEL-Seq2 sequencing data
Allmine
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5
AllMine, a flexible pipeline for Allele Mining. Develloped at INRA's GAFL unit :
Diff_bum_hmm
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5
Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, based on an extension of the BUM-HMM method.
Mykrobe_tb_workflow
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5
A workflow for analysis and resistance profiling of Mycobacterium tuberculosis nanopore data with Mykrobe
Metabolicprofile_inferring
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5
Metagenomic functional annotation pipeline
Drugfindr
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5
Repository holding the code for the drugfindR R package
Metagenomics
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5
Snakemake workflow for functional analysis of metagenomic WGS read data.
Recenthgt
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5
A novel bioinformatics pipeline for recent horizontal gene transfer detecting.
Nanoflow
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5
Bioinformatics pipeline for nanopore sequencing data
Tada
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5
A Snakemake-workflow to sample taxa from sequence databases based on taxonomical or phylogenetic information
Fungal Wdl
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5
Broad fungal method repository
Genomenlp
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5
Peptide Shaker Online
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5
Web-based framework for interactive visual analysis of proteomics data
Cvdprediction
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5
Using deep learning and machine learning to predict Cardiovascular disease(CVD)
Baltica
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5
Baltica: integrated differential junction usage
Maize
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5
bioinformatic utility libraries in python
Recimap
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5
Recimap (a reciprocal mapping tool) was developed as a bioinformatics command-line tool/pipeline to find rearrangements breakpoints between two closely related genomes.
Baqcom
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5
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
Ribo Oddr
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5
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
Cellsegmentationtracker
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5
A Python module intended to make cell segmentation, tracking and subsequent (mostly biophysical) statisticial analysis easy
Sentieon Google Genomics
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5
Run Sentieon pipelines on Google Cloud Platform
Bioinformatics
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5
Set of high throughput sequencing analysis scripts to quickly generate and queue jobs on SLURM-based HPC clusters.
Rnaseqworkflow
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5
Roddy RNA-seq Workflow Plugin
Mini Pipelines
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5
collection of scripts that chain together other scripts by preparing and processing/transforming data.
Metagenomics
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5
🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean
Droseu_pipeline
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5
Bioinformatics pipeline for the generation and analysis of the DrosEU data of 2014.
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Python Bioinformatics Pipeline (114)
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