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The Top 23 Wdl Open Source Projects

Open source projects categorized as Wdl
Categories > Wdl
Cromwell ⭐ 944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
total releases 37most recent commit 5 months ago
Toil ⭐ 874
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528most recent commit a month agopypi toil} Downloads
Wdl ⭐ 706
Workflow Description Language - Specification and Implementations
total releases 20most recent commit 5 months ago
Reapack ⭐ 252
📦 Package manager for REAPER
most recent commit 10 months ago
Warp ⭐ 163
WDL Analysis Research Pipelines
most recent commit 5 months ago
Miniwdl ⭐ 160
Workflow Description Language developer tools & local runner
dependent packages 22total releases 77most recent commit 5 months agopypi miniwdl} Downloads
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 5 months ago
Long Read Pipelines ⭐ 108
Long read production pipelines
most recent commit 5 months ago
Gatk4 Data Processing ⭐ 99
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
most recent commit 3 years ago
Gatk4 Germline Snps Indels ⭐ 88
Workflows for germline short variant discovery with GATK4
most recent commit 3 years ago
Workflow Execution Service Schemas ⭐ 82
The WES API is a standard way to run and manage portable workflows.
most recent commit 2 months ago
Tasks ⭐ 78
A collection of reusable WDL tasks. Category:Other
most recent commit 9 months ago
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 5 months agopypi tibanna} Downloads
Ukb_rap ⭐ 68
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
most recent commit 6 months ago
Learn Wdl ⭐ 64
Educational materials for learning WDL
most recent commit 2 years ago
Gatk4 Somatic Snvs Indels ⭐ 54
This repo will be archived soon, these workflows will be housed in the GATK repository under the scripts directory. These workflows are also organized in Dockstore in the GATK Best Practices Workflows collection.
most recent commit 4 years ago
Pytest Workflow ⭐ 52
Configure workflow/pipeline tests using yaml files.
dependent packages 1total releases 18most recent commit 10 months agopypi pytest-workflow} Downloads
Cromshell ⭐ 51
CLI for interacting with Cromwell servers
total releases 2most recent commit 8 months ago
Viral Pipelines ⭐ 48
viral-ngs: complete pipelines
most recent commit 5 months ago
Cumulus ⭐ 45
Cloud-based scalable and efficient single-cell genomics workflows
most recent commit 5 months ago
Skylab ⭐ 40
Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines
total releases 3most recent commit 4 years ago
Five Dollar Genome Analysis Pipeline ⭐ 40
Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-pro
most recent commit 4 years ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62most recent commit 10 months agopypi janis-pipelines.core} Downloads
The 5 Most Depended On Wdl Open Source Projects
Miniwdl ⭐ 160
Workflow Description Language developer tools & local runner
dependent packages 22total releases 77latest release November 05, 2023most recent commit 5 months agopypi miniwdl} Downloads
Toil ⭐ 874
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit a month agopypi toil} Downloads
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 10 months agopypi janis-pipelines.core} Downloads
Pytest Workflow ⭐ 52
Configure workflow/pipeline tests using yaml files.
dependent packages 1total releases 18latest release January 13, 2023most recent commit 10 months agopypi pytest-workflow} Downloads
The 10 Latest Releases In Wdl Open Source Projects
Miniwdl ⭐ 160
Workflow Description Language developer tools & local runner
dependent packages 22total releases 77latest release November 05, 2023most recent commit 5 months agopypi miniwdl} Downloads
Cromshell ⭐ 51
CLI for interacting with Cromwell servers
total releases 2latest release October 17, 2023most recent commit 8 months ago
Janis ⭐ 39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
dependent packages 7total releases 62latest release August 30, 2023most recent commit 10 months agopypi janis-pipelines.core} Downloads
Toil ⭐ 874
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit a month agopypi toil} Downloads
Pumbaa ⭐ 14
Command-line interface for Cromwell server
total releases 25latest release June 06, 2023most recent commit 6 months ago
Pytest Workflow ⭐ 52
Configure workflow/pipeline tests using yaml files.
dependent packages 1total releases 18latest release January 13, 2023most recent commit 10 months agopypi pytest-workflow} Downloads
Oliver ⭐ 36
An opinionated Cromwell orchestration manager.
total releases 27latest release November 20, 2021most recent commit a year ago
Wdldoc ⭐ 26
Create WDL documentation using Markdown.
total releases 14latest release September 10, 2021most recent commit a year ago
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