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The Top 12 Vcf Snps Open Source Projects

Open source projects categorized as Vcf Snps
Categories > Snps
Categories > Science > Vcf
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 6 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Vcf2phylip ⭐ 216
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
most recent commit 10 months ago
Snps ⭐ 82
tools for reading, writing, merging, and remapping SNPs
dependent packages 2total releases 42most recent commit 3 months agopypi snps} Downloads
16gt ⭐ 26
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
most recent commit 4 years ago
Gssplayground ⭐ 21
Lightweight single-html-file-based Genome Segments playground for Visualize genome features cluster(gene arrow map or other features), add synteny among genome fragments or add crosslink among features, add short(PE/MP)/long reads(pacbio or nanopore) mapping or snpindel in vcf(not support complex sv yet), support all CIGAR of sam alignment, directly modify almost all features in Chrome by click the feature
most recent commit 4 years ago
Proxysnps ⭐ 21
🔖 Get SNP proxies from the 1000 Genomes Project.
most recent commit 6 years ago
Vargeno ⭐ 15
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
most recent commit 5 years ago
Vsnp ⭐ 13
vSNP -- validate SNPs
most recent commit a year ago
Radseq ⭐ 12
Collection of Python scripts for parsing/analyses of RAD-seq data
most recent commit 3 years ago
Snpmatch ⭐ 9
A simple python library to identify the most likely strain from the population
most recent commit 4 months ago
Vizsnp St ⭐ 5
Visualizing the effect of SNPs on protein structure using iCn3D
most recent commit a year ago
The 2 Latest Releases In Vcf Snps Open Source Projects
Snps ⭐ 82
tools for reading, writing, merging, and remapping SNPs
dependent packages 2total releases 42latest release June 06, 2022most recent commit 3 months agopypi snps} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
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