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The Top 10 Python Genomics Open Source Projects
Open source projects categorized as Python Genomics
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biopython/biopython
⭐
3,918
Official git repository for Biopython (originally converted from CVS)
dependent packages
0
total releases
0
most recent commit
over 2 years ago
google/deepvariant
⭐
2,978
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
materialsproject/pymatgen
⭐
1,254
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines classes for structures and molecules with support for many electronic structure codes. It powers the Materials Project.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
galaxyproject/galaxy
⭐
1,211
Data intensive science for everyone.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
bigdatagenomics/adam
⭐
966
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
hail-is/hail
⭐
905
Cloud-native genomic dataframes and batch computing
dependent packages
0
total releases
0
most recent commit
over 2 years ago
kblin/ncbi-genome-download
⭐
784
Scripts to download genomes from the NCBI FTP servers
dependent packages
0
total releases
0
most recent commit
almost 3 years ago
tanghaibao/jcvi
⭐
650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages
0
total releases
0
most recent commit
over 2 years ago
seq-lang/seq
⭐
624
A high-performance, Pythonic language for bioinformatics
dependent packages
0
total releases
0
most recent commit
over 3 years ago
deeptools/deepTools
⭐
624
Tools to process and analyze deep sequencing data.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
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