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The Top 23 Genome Sequencing Open Source Projects

Open source projects categorized as Genome Sequencing
Categories > Genome Sequencing
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97most recent commit 4 months agopypi jcvi} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Kubegene ⭐ 169
KubeGene - A turn-key Genome Sequencing workflow management framework
most recent commit 3 years ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Dna Seq Analysis ⭐ 128
DNA sequencing analysis notes from Ming Tang
most recent commit a year ago
Benchmarking Tools ⭐ 110
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
most recent commit 4 years ago
Titancna ⭐ 59
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
most recent commit 3 years ago
Helen ⭐ 52
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
total releases 19most recent commit 3 years ago
Teamteri ⭐ 50
Genomics (computational bioinformatic data analysis) running on GCP, AWS or Azure
most recent commit 8 months ago
Panseq ⭐ 31
Pan-genomic sequence analysis
most recent commit 6 years ago
Genomegraphs.jl ⭐ 29
A modern genomics framework for julia
most recent commit 4 years ago
Awesome Sequencing Tech Papers ⭐ 26
A collection of publications on comparison of high-throughput sequencing technologies.
most recent commit 5 months ago
Aceseqworkflow ⭐ 22
Allele-specific copy number estimation with whole genome sequencing
most recent commit a year ago
Tredparse ⭐ 17
TREDPARSE: HLI Short Tandem Repeat (STR) caller
most recent commit 4 years ago
Ampliconreconstructorom ⭐ 14
Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
most recent commit 5 months ago
Chromeqc ⭐ 13
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
most recent commit 5 years ago
Angelfish Genome Assembly ⭐ 12
This is a pipeline describing how I assembled the complete genome of the freshwater angelfish, Pterophylllum scalare.
most recent commit 2 years ago
Redotable ⭐ 10
A dotplot application for DNA/RNA sequence
most recent commit a year ago
Agaat ⭐ 7
Automated Tool for Global Screening Array analysis
most recent commit 6 months ago
Genome Sequencing ⭐ 7
Assembled Phi-X174 genome using Overlap Graph, Kmer Composition and De-Bruijn Graph.
most recent commit 6 years ago
Aerobio ⭐ 7
Extensible full DAG streaming computation server with services and jobs for RNA-Seq, Tn-Seq, WG-Seq and Term-Seq.
most recent commit 6 months ago
Pecaller ⭐ 7
map and call next generation genomic sequencing
most recent commit 7 years ago
Clarity Ext ⭐ 6
Extensions for Clarity
most recent commit a year ago
The 3 Latest Releases In Genome Sequencing Open Source Projects
Jcvi ⭐ 650
Python library to facilitate genome assembly, annotation, and comparative genomics
dependent packages 1total releases 97latest release August 30, 2023most recent commit 4 months agopypi jcvi} Downloads
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Helen ⭐ 52
H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
total releases 19latest release March 23, 2020most recent commit 3 years ago
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