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The Top 23 Python Fmri Open Source Projects

Open source projects categorized as Python Fmri
Nilearn ⭐ 1,076
Machine learning for NeuroImaging in Python
most recent commit 3 months ago
Pycortex ⭐ 534
Pycortex is a python-based toolkit for surface visualization of fMRI data
dependent packages 1total releases 14most recent commit 4 months agopypi pycortex} Downloads
Brainiak ⭐ 315
Brain Imaging Analysis Kit
total releases 15most recent commit 5 months ago
Tedana ⭐ 149
TE-dependent analysis of multi-echo fMRI
dependent packages 4total releases 21most recent commit 3 months agopypi tedana} Downloads
Neurora ⭐ 130
A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)
dependent packages 1total releases 150most recent commit a year agopypi neurora} Downloads
Nltools ⭐ 116
Python toolbox for analyzing imaging data
dependent packages 2total releases 40most recent commit 6 months agopypi nltools} Downloads
Pynets ⭐ 111
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
total releases 245most recent commit 2 years ago
Dyconnmap ⭐ 89
A dynamic connectome mapping module in python.
total releases 3most recent commit 10 months ago
Neurovault ⭐ 88
Easy to use web database for statistical maps.
most recent commit 5 months ago
Teneto ⭐ 78
Temporal Network Tools
dependent packages 2total releases 24most recent commit 5 months agopypi teneto} Downloads
Visualqc ⭐ 68
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
total releases 30most recent commit 6 months ago
Halfpipe ⭐ 56
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
most recent commit 3 months ago
Stagin ⭐ 55
STAGIN: Spatio-Temporal Attention Graph Isomorphism Network
most recent commit 9 months ago
Nichord ⭐ 53
Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib
dependent packages 1total releases 23most recent commit 6 months agopypi nichord} Downloads
Fmriflows ⭐ 42
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
most recent commit 2 years ago
Connectomemapper3 ⭐ 39
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
total releases 5most recent commit 2 years ago
Samri ⭐ 39
Small Animal Magnetic Resonance Imaging via Python.
most recent commit 7 months ago
Vae Gan Celeba ⭐ 38
Code and notebooks related to the paper: "Reconstructing Faces from fMRI Patterns using Deep Generative Neural Networks" by VanRullen & Reddy, 2019
most recent commit a year ago
Abcd Hcp Pipeline ⭐ 37
bids application for processing functional MRI data, robust to scanner, acquisition and age variability.
most recent commit 4 months ago
Ni Edu ⭐ 36
Student version of NI-edu courses
most recent commit 9 months ago
Load_confounds ⭐ 30
Load fMRIprep confounds in python
dependent packages 1total releases 12most recent commit 2 years agopypi load-confounds} Downloads
Actflowtoolbox ⭐ 29
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
total releases 7most recent commit 4 months ago
Brainplotlib ⭐ 25
A lightweight package to plot brain surfaces with Python.
total releases 8most recent commit 9 months ago
The 8 Most Depended On Python Fmri Open Source Projects
Tedana ⭐ 149
TE-dependent analysis of multi-echo fMRI
dependent packages 4total releases 21latest release November 21, 2023most recent commit 3 months agopypi tedana} Downloads
Hcp Utils ⭐ 6
Utilities to use HCP and HCP-like data with nilearn and other Python tools
dependent packages 2total releases 1latest release January 14, 2020most recent commit 4 years agopypi hcp-utils} Downloads
Teneto ⭐ 78
Temporal Network Tools
dependent packages 2total releases 24latest release February 17, 2021most recent commit 5 months agopypi teneto} Downloads
Nltools ⭐ 116
Python toolbox for analyzing imaging data
dependent packages 2total releases 40latest release October 31, 2023most recent commit 6 months agopypi nltools} Downloads
Load_confounds ⭐ 30
Load fMRIprep confounds in python
dependent packages 1total releases 12latest release August 05, 2021most recent commit 2 years agopypi load-confounds} Downloads
Nichord ⭐ 53
Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib
dependent packages 1total releases 23latest release October 17, 2023most recent commit 6 months agopypi nichord} Downloads
Pycortex ⭐ 534
Pycortex is a python-based toolkit for surface visualization of fMRI data
dependent packages 1total releases 14latest release July 20, 2023most recent commit 4 months agopypi pycortex} Downloads
The 10 Latest Releases In Python Fmri Open Source Projects
Junifer ⭐ 12
Forschungszentrum Jülich Neuroimaging Feature Extractor
total releases 108latest release December 04, 2023most recent commit 3 months ago
Nibabies ⭐ 19
Processing tools for magnetic resonance images of infant brains
total releases 25latest release November 22, 2023most recent commit 3 months ago
Tedana ⭐ 149
TE-dependent analysis of multi-echo fMRI
dependent packages 4total releases 21latest release November 21, 2023most recent commit 3 months agopypi tedana} Downloads
Fmri Physio Log ⭐ 7
Parse Siemens PMU files
total releases 9latest release November 18, 2023most recent commit 3 months ago
Nltools ⭐ 116
Python toolbox for analyzing imaging data
dependent packages 2total releases 40latest release October 31, 2023most recent commit 6 months agopypi nltools} Downloads
Hed Python ⭐ 7
Python validation, summary, and analysis tools for HED (Hierarchical Event Descriptors).
total releases 5latest release October 27, 2023most recent commit 6 months ago
Nichord ⭐ 53
Package for visualizing brain networks. Creates chord diagrams drawn using matplotlib
dependent packages 1total releases 23latest release October 17, 2023most recent commit 6 months agopypi nichord} Downloads
Pycortex ⭐ 534
Pycortex is a python-based toolkit for surface visualization of fMRI data
dependent packages 1total releases 14latest release July 20, 2023most recent commit 4 months agopypi pycortex} Downloads
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