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The Top 81 Neuroimaging Fmri Open Source Projects

Topic > Fmri
Categories > Machine Learning > Neuroimaging
Nilearn ⭐ 874
Machine learning for NeuroImaging in Python
most recent commit 2 days ago
Fmriprep ⭐ 455
fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.
dependent packages 1total releases 156most recent commit 15 days agopypi fmriprep} Downloads
Pycortex ⭐ 442
Pycortex is a python-based toolkit for surface visualization of fMRI data
dependent packages 1total releases 11most recent commit 17 days agopypi pycortex} Downloads
Brainiak ⭐ 271
Brain Imaging Analysis Kit
total releases 15most recent commit 3 months ago
Tedana ⭐ 128
TE-dependent analysis of multi-echo fMRI
dependent packages 3total releases 17most recent commit a month agopypi tedana} Downloads
Canlabcore ⭐ 110
Core tools required for running Canlab Matlab toolboxes. The heart of this toolbox is object-oriented tools that enable interactive analysis of neuroimaging data and simple scripts using high-level commands tailored to neuroimaging analysis.
most recent commit 13 days ago
Nltools ⭐ 95
Python toolbox for analyzing imaging data
total releases 37most recent commit 2 months ago
Braingraph ⭐ 94
Graph theory analysis of brain MRI data
dependent packages 1total releases 11most recent commit a year ago
Mmvt ⭐ 72
The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data
most recent commit 5 months ago
Automaticanalysis ⭐ 63
Automatic Analysis (aa)
most recent commit a month ago
Dyconnmap ⭐ 62
A dynamic connectome mapping module in python.
total releases 3most recent commit 3 months ago
Visualqc ⭐ 57
VisualQC : assistive tool to ease the quality control workflow of neuroimaging data.
dependent packages 1total releases 29most recent commit 2 months agopypi visualqc} Downloads
Fmriflows ⭐ 42
fmriflows is a consortium of many (dependent) fMRI analysis pipelines, including anatomical and functional pre-processing, univariate 1st and 2nd-level analysis, as well as multivariate pattern analysis.
most recent commit 19 days ago
Advanced_fmri_course ⭐ 41
List of ressources and practicals used for the fMRI data analysis course of UoB (UK) (2014-2017)
most recent commit a year ago
Samri ⭐ 35
Small Animal Magnetic Resonance Imaging via Python.
most recent commit a month ago
Ecobidas ⭐ 33
Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist
most recent commit 10 days ago
Stagin ⭐ 31
STAGIN: Spatio-Temporal Attention Graph Isomorphism Network
most recent commit 2 months ago
Halfpipe ⭐ 25
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
most recent commit a day ago
Niak ⭐ 24
GNU Octave library for connectivity analysis in large fMRI datasets
most recent commit 8 months ago
Online_neuroimaging_resources ⭐ 24
a laundry list of resources for MRI, fMRI, EEG, MEG...
most recent commit 4 months ago
Canlab_help_examples ⭐ 21
How-to examples and a batch pipeline for second-level neuroimaging analysis. Batch scripts and examples publish HTML files with code and output.
most recent commit a month ago
Actflowtoolbox ⭐ 15
The Brain Activity Flow ("Actflow") Toolbox. Tools to quantify the relationship between connectivity and task activity through network simulations and machine learning prediction. Helps determine how connections contribute to specific brain functions.
most recent commit 7 months ago
Network_tda_tutorial ⭐ 15
This repository is dedicated for the tutorial on network and topological neuroscience.
most recent commit 4 months ago
Nibabies ⭐ 12
Processing tools for magnetic resonance images of infant brains
most recent commit 16 days ago
Neuroml2020 ⭐ 12
Skoltech course on Machine Learning in Neuroimaging data, Fall 2020.
most recent commit 9 months ago
Rmvpa ⭐ 11
Multivoxel Pattern Analysis in R
most recent commit a day ago
Xdf ⭐ 11
xDF estimates variance of Pearson's correlations among highly autocorrelated time series.
most recent commit a year ago
Bids Tools ⭐ 11
Tools for dealing with neuroimaging data in the BIDS structure
most recent commit 4 years ago
Conn_tools ⭐ 11
Some tools for the extraction and plot of second-level ROI-to-ROI results from CONN Toolbox
most recent commit 5 years ago
Brainplotlib ⭐ 11
A lightweight package to plot brain surfaces with Python.
total releases 6most recent commit 2 months ago
Brainconn ⭐ 10
A Python implementation of the brain connectivity toolbox.
most recent commit 4 years ago
Ni Edu ⭐ 10
Student version of NI-edu courses
most recent commit 3 months ago
Friendengine ⭐ 10
FRIEND engine is a new implementation of the FRIEND software, a fMRI neurofeedback processing package, already available on the NITRC repository
most recent commit 3 years ago
Budapest Fmri Data ⭐ 10
Quality assurance analyses of fMRI data collected while participants watched The Grand Budapest Hotel by Wes Anderson.
most recent commit 2 years ago
Pypes ⭐ 9
Reusable neuroimaging pipelines using nipype
most recent commit 3 years ago
Sdc Bids Fmri ⭐ 9
fMRI Imaging Analysis
most recent commit 8 months ago
Dvars ⭐ 8
Insight & Inference for DVARS: 3-part variance decomposition, gives units & p-values to DVARS measures as well as spatiotemporal rs-fMRI diagnostic.
most recent commit 3 years ago
Hed Specification ⭐ 6
Specification documents for HED (Hierarchical Event Descriptors)
most recent commit 13 days ago
Neurosynth_semantic_map ⭐ 6
A repository for "The Latent Semantic Space and Corresponding Brain Regions of the Functional Neuroimaging Literature" -- http://www.biorxiv.org/content/early/2017/07/20/15
most recent commit 4 years ago
Lectures_on_neuroimaging ⭐ 6
most recent commit 5 years ago
Oppni ⭐ 6
Optimization of Preprocessing Pipelines for NeuroImaging (OPPNI) for fMRI preprocessing
most recent commit a year ago
Bayesfactorfmri ⭐ 5
BayesFactorFMRI is a tool developed with R and Python to allow neuroimaging researchers to conduct Bayesian second-level analysis of fMRI data and Bayesian meta-analysis of fMRI images with multiprocessing.
most recent commit 7 months ago
Afniglmprep ⭐ 5
afniGLMprep is python code which prepares and runs GLMs on neuroimaging data stored in the BIDS format (http://bids.neuroimaging.io/). This is done via AFNI's 3dDeconvolve function.
most recent commit 2 years ago
Fmri_roi_analysis_tool ⭐ 5
An analysis tool that uses per-voxel statistical maps in conjunction with FSL atlases to create per-region statistical maps. Current usage includes the creation of regional maps of: T2* value and temporal signal to noise ratio.
most recent commit 3 months ago
Deepretinotopy ⭐ 5
Code for predicting retinotopy from anatomy using geometric deep learning. See paper for more --> https://www.sciencedirect.com/science/article/pii/
most recent commit a month ago
Kul_nis ⭐ 5
KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.
most recent commit 3 months ago
Nonfractal ⭐ 5
MATLAB Toolbox for estimating nonfractal connectivity and fractal connectivity
most recent commit 4 years ago
Aroma ⭐ 5
ICA-AROMA, as a Python package. A work in progress.
most recent commit 7 months ago
Conan ⭐ 5
CONnectivity ANalysis tools in Matlab
most recent commit 5 years ago
Kylespmtoolbox ⭐ 5
Repository home of custom MATLAB scripts designed to perform mass univariate analyses using the Statistical Parametric Mapping (SPM) software package
most recent commit 2 years ago
Cis Processing ⭐ 4
Automated transfer, conversion, and processing of data acquired at the FIU Center for Imaging Science.
most recent commit 2 years ago
Bold5000 ⭐ 4
Official code release for BOLD5000 Release 2.0
most recent commit 8 months ago
Personode ⭐ 3
Personode: a new toolbox for ICA map classification and individualized ROI definition
most recent commit 2 years ago
Diagnosing Adhd With Convlstm ⭐ 3
Classifying ADHD fMRI data with a CNN+LSTM Model
most recent commit 3 years ago
Fmri Classification Example ⭐ 3
Pattern classification with fMRI data. Reproduced from Poldrack's repository by Matlab.
most recent commit 3 years ago
Hed Python ⭐ 3
Python validation, summary, and analysis tools for HED (Hierarchical Event Descriptors).
most recent commit 6 days ago
Spm_fmri_example_pipeline ⭐ 3
Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis
most recent commit 4 years ago
Cvnrimagingcore ⭐ 2
CVNR Imaging Core Issues List
most recent commit 3 years ago
Bfmeta ⭐ 2
BFMeta program
most recent commit 2 years ago
Multi Frame ⭐ 2
Package for multivariate fMRI analyses
most recent commit 2 years ago
Hemolearn ⭐ 2
Haemodynamic Response Function estimation for fMRI data in Python
most recent commit a year ago
Tutorial Prni 2017 ⭐ 2
This repository contains iPython notebooks that run on the octave kernel to accompany tutorial and slides presented at PRNI
most recent commit 4 years ago
Lsnm_in_python ⭐ 2
Large Scale Neural Modeling (LSNM) simulator in Python
most recent commit 4 years ago
Biacpype ⭐ 2
A pipeline for converting data from Duke BIAC to BIDS format
most recent commit 3 years ago
Phys2cvr ⭐ 2
python module to compute cerebrovascular reactivity mapping and other related maps
most recent commit 2 days ago
Fmri_training ⭐ 2
fMRI training materials
most recent commit 4 months ago
Langbrainscore ⭐ 2
Benchmarking of Language Models using Human Neural and Behavioral experiment data
most recent commit 12 days ago
Hed Web ⭐ 1
Web interface and docker deployment for python HED (Hierarchical Event Descriptor) tools.
most recent commit 3 days ago
Avt_analysis ⭐ 1
Code to analyze audio-visual-tactile high-resolution 7T data
most recent commit 12 days ago
Fslfeatsetup ⭐ 1
Python library for setting up FEAT analyses (FSL)
most recent commit 10 months ago
Curso_neuroimagen_reproducibilidad ⭐ 1
Repositorio con material de la exposición "Uso de bases de datos libres y reproducibilidad" como parte del curso "Introducción a la neuroimagen computacional para investigación en psiquiatría" impartido en el Instituto Nacional de Psiquiatría “Ramón de la fuente Muñiz” del 11 al 13 de diciembre del 2017, coordinado por el Dr. Eduardo Garza Villarreal.
most recent commit 5 years ago
Ddmra ⭐ 1
Code for running distance-dependent motion-related artifact analyses in Python
most recent commit 4 months ago
Dicom_2_bids ⭐ 1
a set of scripts and function to convert DICOM data into a brain imaging data structure using matlab and SPM12
most recent commit 7 months ago
Pyale ⭐ 1
A Python implementation of the activation likelihood estimation (ALE) meta-analytic algorithm. Deprecated in favor of NiMARE.
most recent commit 4 years ago
Cosgen ⭐ 1
Contrast Optimized Stimulation generator
most recent commit 5 years ago
Multivariate_pattern_analysis ⭐ 1
Facial attractiveness in the brain: A multivariate pattern analysis
most recent commit 2 years ago
Budapest_hyperalignment ⭐ 1
Scripts to perform hyperalignment and movie segment decoding using the Budapest dataset.
most recent commit 2 years ago
Domain General ⭐ 1
Apšvalka, D., Ferreira, C. S., Schmitz, T. W., Rowe, J. B., & Anderson, M. C. (2020). Dynamic targeting enables domain-general inhibitory control over action and thought by the prefrontal cortex. bioRxiv, 2020.10.22.350520.
most recent commit 3 months ago
Niutils ⭐ 1
most recent commit 5 months ago
Neuroim2 ⭐ 1
R data structures and function for fMRI-focused neuroimaging analysis
most recent commit 4 months ago
Spinalcordplot ⭐ 1
SpinalCordPlot: Visualization tool for qualitative analysis of spinal cord functional MRI data.
most recent commit 6 months ago
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