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The Top 23 Docker Cwl Open Source Projects

Open source projects categorized as Docker Cwl
Cromwell ⭐ 944
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
total releases 37most recent commit 3 months ago
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9most recent commit 3 months ago
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430most recent commit 3 months agopypi cwltool} Downloads
Dockstore ⭐ 113
Our VM/Docker sharing infrastructure and management component
most recent commit 3 months ago
Analysis Workflows ⭐ 99
Open workflow definitions for genomic analysis from MGI at WUSM.
most recent commit 10 months ago
Bunny ⭐ 70
[Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0
most recent commit 5 years ago
Tibanna ⭐ 68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
dependent packages 1total releases 280most recent commit 4 months agopypi tibanna} Downloads
Cwlviewer ⭐ 40
A web application to view and share Common Workflow Language workflows
most recent commit 3 months ago
Workflows ⭐ 28
Bioinformatics workflows developed for and used on the St. Jude Cloud project.
most recent commit 3 months ago
Hotsub ⭐ 23
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computing resources
total releases 22most recent commit 5 years ago
Chiron ⭐ 16
Tools and utilities for running Dockerized metagenomics tools in the Cloud
most recent commit 5 years ago
Ipython2cwl ⭐ 15
IPython2CWL is a tool for converting IPython Jupyter Notebooks to CWL Command Line Tools by simply providing typing annotation.
most recent commit 3 years ago
Cloudneo ⭐ 13
CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
most recent commit 5 years ago
Pymethylprocess ⭐ 10
Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
total releases 7most recent commit 4 years ago
Gales ⭐ 8
Genomic Annotation Logic and Execution System
most recent commit 5 months ago
Bcbio_docker ⭐ 8
Automated Docker builds for bcbio
most recent commit 3 years ago
Q2cwl ⭐ 8
Prototype interface for automatically generating CWL tools from QIIME 2 actions
most recent commit 4 months ago
Cerise ⭐ 7
A REST service for running CWL workflows on remote clusters
most recent commit 5 years ago
Epigenomics_cwl ⭐ 7
SCREW: A Reproducible Workflow for Single-Cell Epigenomics
most recent commit 7 years ago
Containerinception ⭐ 6
Gerber: Generalized Easy Reproducible Bioinformatics Environment wRapper
most recent commit 6 years ago
Bioc2020rcwl ⭐ 6
Bioconductor toolchain for usage and development of reproducible bioinformatics pipelines
most recent commit 4 years ago
Test_bcbio_cwl ⭐ 6
Test workflows, run scripts and data for bcbio Common Workflow Language integration
most recent commit 5 years ago
Sbg Cgc_course2018 ⭐ 6
IARC course on analyzing TCGA data in the SevenBridges Genomics CancerGenomicsCloud (SBG-CGC)
most recent commit 6 years ago
The 2 Most Depended On Docker Cwl Open Source Projects
The 6 Latest Releases In Docker Cwl Open Source Projects
Cwltool ⭐ 314
Common Workflow Language reference implementation
dependent packages 38total releases 430latest release December 07, 2023most recent commit 3 months agopypi cwltool} Downloads
Arvados ⭐ 354
An open source platform for managing and analyzing biomedical big data
total releases 9latest release September 21, 2023most recent commit 3 months ago
Pymethylprocess ⭐ 10
Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
total releases 7latest release February 11, 2020most recent commit 4 years ago
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