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The Top 23 Computational Biology Open Source Projects

Open source projects categorized as Computational Biology
Categories > Computational Biology
Metheor ⭐ 26
☄️ Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments
most recent commit a year ago
Pipeliner ⭐ 25
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
most recent commit 5 years ago
Tape ⭐ 25
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
total releases 24most recent commit a year ago
Protein Transformer ⭐ 25
Predicting protein structure through sequence modeling
most recent commit 4 years ago
10 Simple Rules Data Storage ⭐ 24
A repository for the 10 simple rules data sharing paper to be submitted to PLoS Comp Biology
most recent commit 8 years ago
Regulatory Prediction ⭐ 24
Code and Data to accompany "Dilated Convolutions for Modeling Long-Distance Genomic Dependencies", presented at the ICML 2017 Workshop on Computational Biology
most recent commit 7 years ago
Teaching ⭐ 24
Code and files used in teaching and training courses.
most recent commit 8 years ago
Soap3 Dp ⭐ 24
To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be configured to favor speed in trade of accuracy and sensitivity. SOAP3-dp, through leveraging the computational power of both CPU and GPU with optimized algorithms, delivers high speed and sensitivity simultaneously.
most recent commit 3 years ago
Fastheatmap ⭐ 23
Super high performance interactive heatmap software
most recent commit 6 years ago
Review ⭐ 23
🌎 Review materials for bioinformatics, computational biology, and science in general
most recent commit a year ago
Biomass ⭐ 23
A Python Framework for Modeling and Analysis of Signaling Systems
most recent commit 9 months ago
Mitre ⭐ 22
The Microbiome Interpretable Temporal Rule Engine
most recent commit 4 years ago
Symmetry ⭐ 22
🎡 Detect, analyze, and visualize protein symmetry
most recent commit 2 years ago
Lexicon ⭐ 22
Data visualization library for creating interactive graphs and dashboards for bioinformatics etc.
dependent packages 2total releases 3most recent commit 6 years agonpm d3-lexicon} Downloads
Pubdata ⭐ 21
Smart search engine for all bioinformatics databases worldwide
most recent commit 7 years ago
Sbinns ⭐ 21
most recent commit 2 years ago
Patchsim ⭐ 21
Code for simulating the metapopulation SEIR model. Sample network for US national simulation included.
most recent commit 9 months ago
Kif ⭐ 20
KIF - Key Interactions Finder. A python package to identify the key molecular interactions that regulate any conformational change.
most recent commit 9 months ago
Aptasuite ⭐ 20
A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
most recent commit 2 years ago
Teaching ⭐ 20
Courses & workshops led by members of the Krishnan Lab.
most recent commit 2 years ago
Decode ⭐ 19
A prediction model for differential gene expression (DE) based on genome-wide regulatory interactions
most recent commit a year ago
Heatmapgenerator ⭐ 19
Cross-platform GUI desktop application for making biological heatmaps
most recent commit 4 years ago
Slamdunk ⭐ 18
Streamlining SLAM-seq analysis with ultra-high sensitivity
most recent commit 4 years ago
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