Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
---|---|---|---|---|---|---|---|---|---|---|
Containers | 621 | 3 months ago | 39 | apache-2.0 | Dockerfile | |||||
Bioinformatics containers | ||||||||||
Docker Builds | 158 | 3 months ago | 55 | gpl-3.0 | HTML | |||||
:package: :whale: Dockerfiles and documentation on tools for public health bioinformatics | ||||||||||
Redundans | 121 | 4 months ago | 1 | gpl-3.0 | C++ | |||||
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes. | ||||||||||
Cgview | 30 | 8 months ago | gpl-3.0 | Java | ||||||
CGView is a Java package for generating high-quality, zoomable maps of circular genomes. | ||||||||||
Omicselector | 26 | 10 months ago | other | R | ||||||
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR. | ||||||||||
Slamdunk | 18 | 4 years ago | 17 | agpl-3.0 | Python | |||||
Streamlining SLAM-seq analysis with ultra-high sensitivity | ||||||||||
Docker4seq | 18 | 7 months ago | 5 | gpl-3.0 | HTML | |||||
Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers. | ||||||||||
Cnnpeaks | 13 | 3 years ago | mit | Python | ||||||
The ChIP-Seq peak calling algorithm using convolution neural networks | ||||||||||
Gooddoc | 12 | 6 years ago | mit | |||||||
A Template for Clear and Simple Documentation of Bioinformatics Code | ||||||||||
Faerun | 11 | 2 years ago | 11 | mit | JavaScript | |||||
Web-based visualization of large, high-dimensional datasets. |