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The Top 23 C Plus Plus Sequencing Open Source Projects

Open source projects categorized as C Plus Plus Sequencing
Categories > Programming Languages > C Plus Plus
Categories > Science > Sequencing
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1most recent commit 7 months ago
Uncalled ⭐ 507
Raw nanopore signal mapper that enables real-time targeted sequencing
most recent commit 5 months ago
Hisat2 ⭐ 345
Graph-based alignment (Hierarchical Graph FM index)
most recent commit 2 years ago
Manta ⭐ 333
Structural variant and indel caller for mapped sequencing data
most recent commit a year ago
Shasta ⭐ 269
[MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads
most recent commit 2 years ago
Snap ⭐ 269
Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data
most recent commit a year ago
Sortmerna ⭐ 220
SortMeRNA: next-generation sequence filtering and alignment tool
most recent commit a month ago
Ugene ⭐ 190
UGENE is free open-source cross-platform bioinformatics software
most recent commit 3 months ago
Genomicsqlite ⭐ 146
Genomics Extension for SQLite
dependent packages 1total releases 21most recent commit 3 months agopypi genomicsqlite} Downloads
Alfred ⭐ 129
BAM Statistics, Feature Counting and Annotation
most recent commit 4 months ago
Freec ⭐ 112
Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data
most recent commit a year ago
Glimpse ⭐ 110
Low Coverage Calling of Genotypes
most recent commit 4 months ago
Gencore ⭐ 103
Generate duplex/single consensus reads to reduce sequencing noises and remove duplications
most recent commit 6 months ago
Msisensor ⭐ 99
microsatellite instability detection using tumor only or paired tumor-normal data
most recent commit 3 years ago
Assembly Stats ⭐ 92
Get assembly statistics from FASTA and FASTQ files
most recent commit a year ago
Tracy ⭐ 92
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
most recent commit 4 months ago
Wally ⭐ 86
Wally: Visualization of aligned sequencing reads and contigs
most recent commit 3 months ago
Glnexus ⭐ 83
Scalable gVCF merging and joint variant calling for population sequencing projects
most recent commit 2 years ago
Shapeit4 ⭐ 81
Segmented HAPlotype Estimation and Imputation Tool
most recent commit a year ago
Staar ⭐ 81
An R package for performing STAAR procedure in whole-genome sequencing studies
most recent commit 3 months ago
Skewer ⭐ 70
most recent commit 8 years ago
Bloomtree ⭐ 68
most recent commit 5 years ago
Msisensor Pro ⭐ 63
Microsatellite Instability (MSI) detection using high-throughput sequencing data.
most recent commit 2 years ago
The 4 Latest Releases In C Plus Plus Sequencing Open Source Projects
Jackalope ⭐ 8
A swift, versatile phylogenomic and high-throughput sequencing simulator
total releases 10latest release October 15, 2023most recent commit 5 months ago
Genomicsqlite ⭐ 146
Genomics Extension for SQLite
dependent packages 1total releases 21latest release December 28, 2022most recent commit 3 months agopypi genomicsqlite} Downloads
Nsearch ⭐ 10
Next-Generation Sequencing (NGS) Data Processing Tool & Library
total releases 1latest release March 12, 2022most recent commit a year ago
Fastp ⭐ 1,602
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging.
total releases 1latest release December 15, 2021most recent commit 7 months ago
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