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The Top 23 Tool Bioinformatics Open Source Projects

Open source projects categorized as Tool Bioinformatics
Categories > Data Processing > Bioinformatics
Awesome Bioinformatics ⭐ 2,505
A curated list of awesome Bioinformatics libraries and software.
most recent commit 8 months ago
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30most recent commit 3 months agopypi galaxy-util} Downloads
Seqkit ⭐ 1,133
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
total releases 122most recent commit 3 months ago
Csvtk ⭐ 923
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
dependent packages 1total releases 83most recent commit 3 months ago
Dash Bio ⭐ 485
Open-source bioinformatics components for Dash
dependent packages 11total releases 72most recent commit 8 months agopypi dash-bio} Downloads
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 6 months ago
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38most recent commit 4 months agopypi pdb-tools} Downloads
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16most recent commit 3 months ago
Bionode ⭐ 285
Modular and universal bioinformatics
dependent packages 3total releases 27most recent commit 4 years agonpm bionode} Downloads
Bioinformatics ⭐ 227
Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics
most recent commit 4 years ago
Tools ⭐ 205
Python package with helper tools for the nf-core community.
dependent packages 2total releases 42most recent commit 3 months agopypi nf-core} Downloads
Gfatools ⭐ 181
Tools for manipulating sequence graphs in the GFA and rGFA formats
most recent commit 6 months ago
Biowasm ⭐ 165
WebAssembly modules for genomics
total releases 1most recent commit 3 months ago
Rna Tools ⭐ 129
🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
total releases 110most recent commit 3 months ago
Hamronization ⭐ 105
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
total releases 4most recent commit 6 months ago
Cloops ⭐ 99
Accurate and flexible loops calling tool for 3D genomic data.
most recent commit 2 years ago
What_the_phage ⭐ 96
WtP: Phage identification via nextflow and docker or singularity
most recent commit 3 months ago
Fastq.bio ⭐ 93
An interactive web tool for quality control of DNA sequencing data
most recent commit a year ago
Sinto ⭐ 86
Tools for single-cell data processing
total releases 32most recent commit 8 months ago
Aioli ⭐ 83
Framework for building fast genomics web tools with WebAssembly and WebWorkers
dependent packages 4total releases 24most recent commit 7 months agonpm @biowasm/aioli} Downloads
Dash Tools ⭐ 73
DashTools - Plotly Dash Command Line Tools - Create, Run and Deploy Templated Python Apps from Terminal
total releases 48most recent commit 6 months ago
Bionode Ncbi ⭐ 63
Node.js module for working with the NCBI API (aka e-utils).
dependent packages 6total releases 49most recent commit 4 years agonpm bionode-ncbi} Downloads
Awesome Genetics ⭐ 62
A curated list of awesome bioinformatics software.
most recent commit 2 years ago
The 10 Most Depended On Tool Bioinformatics Open Source Projects
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Dash Bio ⭐ 485
Open-source bioinformatics components for Dash
dependent packages 11total releases 72latest release March 19, 2022most recent commit 8 months agopypi dash-bio} Downloads
Bionode Ncbi ⭐ 63
Node.js module for working with the NCBI API (aka e-utils).
dependent packages 6total releases 49latest release April 26, 2017most recent commit 4 years agonpm bionode-ncbi} Downloads
Bionode Fasta ⭐ 13
Streamable FASTA parser.
dependent packages 5total releases 13latest release April 25, 2017most recent commit 4 years agonpm bionode-fasta} Downloads
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 4 months agopypi pdb-tools} Downloads
Aioli ⭐ 83
Framework for building fast genomics web tools with WebAssembly and WebWorkers
dependent packages 4total releases 24latest release September 17, 2022most recent commit 7 months agonpm @biowasm/aioli} Downloads
Bionode Sam ⭐ 5
Node.js wrapper for samtools.
dependent packages 4total releases 6latest release October 24, 2014most recent commit 7 years agonpm bionode-sam} Downloads
Bionode Sra ⭐ 6
Node.js wrapper for SRA Toolkit
dependent packages 4total releases 13latest release January 09, 2019most recent commit 5 years agonpm bionode-sra} Downloads
Bionode Bwa ⭐ 7
A Node.js wrapper for the Burrow-Wheeler Aligner (BWA).
dependent packages 4total releases 11latest release April 05, 2015most recent commit 7 years agonpm bionode-bwa} Downloads
Bionode Seq ⭐ 7
Module for DNA, RNA and protein sequences manipulation
dependent packages 4total releases 1latest release September 02, 2014most recent commit 7 years agonpm bionode-seq} Downloads
The 10 Latest Releases In Tool Bioinformatics Open Source Projects
Tools ⭐ 205
Python package with helper tools for the nf-core community.
dependent packages 2total releases 42latest release December 20, 2023most recent commit 3 months agopypi nf-core} Downloads
Galaxy ⭐ 1,211
Data intensive science for everyone.
dependent packages 23total releases 30latest release December 08, 2023most recent commit 3 months agopypi galaxy-util} Downloads
Csvtk ⭐ 923
A cross-platform, efficient and practical CSV/TSV toolkit in Golang
dependent packages 1total releases 83latest release November 27, 2023most recent commit 3 months ago
Seqkit ⭐ 1,133
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
total releases 122latest release November 18, 2023most recent commit 3 months ago
Hamronization ⭐ 105
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
total releases 4latest release October 18, 2023most recent commit 6 months ago
Sinto ⭐ 86
Tools for single-cell data processing
total releases 32latest release September 07, 2023most recent commit 8 months ago
Pathway Mapper ⭐ 52
PathwayMapper: An interactive and collaborative graphical curation tool for cancer pathways
dependent packages 2total releases 15latest release May 26, 2023most recent commit a year agonpm pathway-mapper} Downloads
Fgbio ⭐ 292
Tools for working with genomic and high throughput sequencing data.
total releases 16latest release May 16, 2023most recent commit 3 months ago
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