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The Top 23 Sequence Bioinformatics Open Source Projects

Open source projects categorized as Sequence Bioinformatics
Categories > Data Processing > Bioinformatics
Categories > Data Processing > Sequence
Bac Genomics Scripts ⭐ 28
Collection of scripts for bacterial genomics
most recent commit 4 years ago
Tidysq ⭐ 28
tidy processing of biological sequences in R
total releases 3most recent commit 2 years ago
Vapid ⭐ 27
VAPiD: Viral Annotation and Identification Pipeline
most recent commit 3 years ago
Orfipy ⭐ 25
Fast and flexible ORF finder
total releases 4most recent commit 2 years ago
Sina ⭐ 24
SINA - Reference based multiple sequence alignment
most recent commit 3 years ago
Kinfin ⭐ 24
Taxon-aware analysis of clustered protein sequences
most recent commit 2 years ago
Opal ⭐ 24
SIMD C/C++ library for massive optimal sequence alignment (local/SW, infix, overlap, global)
most recent commit 2 years ago
Fusiondirect.jl ⭐ 23
(No maintenance) Detect gene fusion directly from raw fastq files
most recent commit 7 years ago
Primerminer ⭐ 22
R mased batch sequence downloader, with primer development and in silico evaluation capabilities
most recent commit 5 years ago
Treesapp ⭐ 22
A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
most recent commit a year ago
Crazydoc ⭐ 22
Read DNA sequences from colourful Microsoft Word documents
dependent packages 2total releases 6most recent commit a year agopypi crazydoc} Downloads
Sequencework ⭐ 22
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
most recent commit 4 months ago
Samstat ⭐ 20
SAMStat displays various properties of next-generation sequencing reads stored in SAM/BAM format.
most recent commit 9 months ago
Aptasuite ⭐ 20
A full-featured bioinformatics software collection for the comprehensive analysis of aptamers in HT-SELEX experiments.
most recent commit 2 years ago
Tiptoft ⭐ 20
Predict plasmids from uncorrected long read data
total releases 6most recent commit 4 years ago
Partie ⭐ 20
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
most recent commit 2 years ago
Metacherchant ⭐ 19
most recent commit 4 months ago
Cgview_comparison_tool ⭐ 19
The CGView Comparison Tool (CCT) is a package for visually comparing bacterial, plasmid, chloroplast, and mitochondrial sequences.
most recent commit 2 years ago
Bioinfo ⭐ 19
Various bioinformatics tools
most recent commit 7 months ago
Catt ⭐ 18
An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
most recent commit 6 months ago
Bionitio Python ⭐ 18
Demonstrating best practices for bioinformatics command line tools
most recent commit 4 years ago
Wgs2ncbi ⭐ 18
Toolkit for preparing genomes for submission to NCBI
most recent commit 3 years ago
Motifmatchr ⭐ 17
Fast motif matching in R
most recent commit 7 years ago
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