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The Top 23 Bioinformatics Protein Sequences Open Source Projects

Open source projects categorized as Bioinformatics Protein Sequences
Categories > Data Processing > Bioinformatics
Categories > Protein Sequences
Biojava ⭐ 564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
dependent packages 16total releases 56most recent commit 3 months ago
Dnanalyzer ⭐ 122
Revolutionizing DNA analysis and making it accessible to all through innovative AI-powered analysis and interpretive tools
most recent commit 5 months ago
Peptides ⭐ 71
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
dependent packages 4total releases 21most recent commit 4 months ago
Lambda ⭐ 70
LAMBDA – the Local Aligner for Massive Biological DatA
most recent commit 4 months ago
Protflash ⭐ 62
ProtFlash: A lightweight protein language model
total releases 2most recent commit 10 months ago
Pymod ⭐ 61
PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.
most recent commit 4 months ago
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22most recent commit 6 months ago
Finder ⭐ 44
A fully automated gene annotator from RNA-Seq expression data
most recent commit 10 months ago
Rcpi ⭐ 28
Molecular informatics toolkit with a comprehensive integration of bioinformatics and cheminformatics tools for drug discovery.
most recent commit 10 months ago
Sequencework ⭐ 22
programs and scripts, mainly python, for analyses related to nucleic or protein sequences
most recent commit 3 months ago
Propy3 ⭐ 20
A Python 3 version of the protein descriptor package propy
most recent commit 2 years ago
Graph Part ⭐ 16
A biological sequence data partitioning method
most recent commit 6 months ago
Deepcoil ⭐ 16
Fast and accurate prediction of coiled coil domains in protein sequences. ​
total releases 2most recent commit 2 years ago
Proteinsolver ⭐ 12
Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.
most recent commit 3 years ago
Gotranseq ⭐ 11
convert nucleic sequence in protein sequence
total releases 6most recent commit a year ago
Cazy_webscraper ⭐ 10
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
dependent packages 1total releases 29most recent commit 3 months agopypi cazy-webscraper} Downloads
Protein Feature Extraction ⭐ 10
Python code to extract features from Protein sequences for Machine Learning/Deep Learning
total releases 4most recent commit 2 years ago
Seqshuffle.jl ⭐ 9
Shuffle the string sequences such that the k-mer frequency is preserved in each string
most recent commit a year ago
Blss ⭐ 8
A suite of unique bioinformatics tools for the brave explorer.
most recent commit 5 years ago
Seqr ⭐ 8
fast and comprehensive k-mer counting package
total releases 1most recent commit 3 years ago
Plaac ⭐ 8
Prion-Like Amino Acid Composition
most recent commit 4 years ago
Python_scripts ⭐ 7
scripts for parsing PDB, fasta, and GO
most recent commit 3 years ago
Dotplot ⭐ 7
Simple visualisation tool for sequences' similarity in bioinformatics
total releases 5most recent commit 6 years ago
The 4 Most Depended On Bioinformatics Protein Sequences Open Source Projects
Peptides ⭐ 71
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
dependent packages 4total releases 21latest release May 14, 2021most recent commit 4 months ago
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22latest release October 30, 2023most recent commit 6 months ago
Cazy_webscraper ⭐ 10
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
dependent packages 1total releases 29latest release January 16, 2023most recent commit 3 months agopypi cazy-webscraper} Downloads
The 10 Latest Releases In Bioinformatics Protein Sequences Open Source Projects
Protr ⭐ 50
🧬 Toolkit for generating various numerical features of protein sequences
dependent packages 2total releases 22latest release October 30, 2023most recent commit 6 months ago
Protflash ⭐ 62
ProtFlash: A lightweight protein language model
total releases 2latest release July 03, 2023most recent commit 10 months ago
Gotranseq ⭐ 11
convert nucleic sequence in protein sequence
total releases 6latest release February 02, 2023most recent commit a year ago
Cazy_webscraper ⭐ 10
Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.
dependent packages 1total releases 29latest release January 16, 2023most recent commit 3 months agopypi cazy-webscraper} Downloads
Seqr ⭐ 8
fast and comprehensive k-mer counting package
total releases 1latest release September 15, 2021most recent commit 3 years ago
Peptides ⭐ 71
An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
dependent packages 4total releases 21latest release May 14, 2021most recent commit 4 months ago
Deepcoil ⭐ 16
Fast and accurate prediction of coiled coil domains in protein sequences. ​
total releases 2latest release November 30, 2020most recent commit 2 years ago
Dotplot ⭐ 7
Simple visualisation tool for sequences' similarity in bioinformatics
total releases 5latest release May 25, 2017most recent commit 6 years ago
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