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The Top 23 Bioinformatics Ngs Open Source Projects

Open source projects categorized as Bioinformatics Ngs
Categories > Data Processing > Bioinformatics
Categories > Science > Ngs
Variantconvert ⭐ 9
A customizable genetic variants file format converter.
most recent commit 8 months ago
Fastqwiper ⭐ 9
An ensamble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired reads, and fix reads interleaving.
total releases 27most recent commit 6 months ago
Ngs_workshop_advanced_bioinformatics ⭐ 9
most recent commit a year ago
Tophat Recondition ⭐ 9
Post-processor for TopHat unmapped.bam files making them useable by downstream software.
most recent commit 5 years ago
Captus ⭐ 8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
most recent commit 3 months ago
Docker Ngs Tools ⭐ 8
A catalogue of docker images for NGS data analysis tools
most recent commit 5 years ago
Nanosim H ⭐ 8
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.
total releases 7most recent commit 3 years ago
Seal ⭐ 8
SEAL db - Simple, Efficient And Lite database for NGS
most recent commit 4 months ago
Rs_demultiplex ⭐ 7
Simple demultiplexing of FASTQ, one oligo (barcode) at a time
most recent commit 2 years ago
Staph B.github.io ⭐ 7
Visit the site here: https://staphb.org
most recent commit a year ago
Fonda ⭐ 7
Fonda is a framework which offers scalable and automatic analysis of multiple NGS sequencing data types
most recent commit 2 years ago
Esviritu ⭐ 7
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
most recent commit 5 months ago
Microhapdb ⭐ 7
Portable database of microhaplotype marker and allele frequency data
total releases 13most recent commit 6 months ago
Cowwid ⭐ 7
Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.
most recent commit 8 months ago
Htsinfer ⭐ 7
HTSinfer infers metadata from Illumina high throughput sequencing (HTS) data
total releases 1most recent commit 3 months ago
Malva ⭐ 7
genotyping by Mapping-free ALternate-allele detection of known VAriants
most recent commit 2 years ago
Unmasc ⭐ 6
Tumor-only variant calling
most recent commit 6 months ago
Nanoforms ⭐ 6
The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology. PeerJ, 2022). It is meant to be the source for standalone server installation. https://doi.org/10.7717/peerj.13056
most recent commit a year ago
Recallme ⭐ 5
Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer
most recent commit 4 months ago
Microhapulator ⭐ 5
Tools for empirical microhaplotype calling, forensic interpretation, and simulation.
most recent commit 6 months ago
Kcri Cge Bap ⭐ 5
KCRI CGE Bacterial Analysis Pipeline
most recent commit 5 months ago
Decontaminer ⭐ 5
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further investigation and experimental validation. The novelty of DecontaMiner is mainly represented by its easy integration with the standard procedures of NGS da
most recent commit a year ago
Gbsapp ⭐ 5
Automated Pipeline for Variant/Haplotype Calling and Filtering
most recent commit 4 months ago
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