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The Top 23 Bioinformatics Biology Open Source Projects

Open source projects categorized as Bioinformatics Biology
Categories > Data Processing > Bioinformatics
Categories > Science > Biology
Awesome Deepbio ⭐ 1,467
A curated list of awesome deep learning applications in the field of computational biology
most recent commit 5 years ago
Getting Started With Genomics Tools And Resources ⭐ 991
Unix, R and python tools for genomics and data science
most recent commit 3 months ago
Tdc ⭐ 889
Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
dependent packages 4total releases 32most recent commit 4 months agopypi PyTDC} Downloads
Ncbi Genome Download ⭐ 784
Scripts to download genomes from the NCBI FTP servers
dependent packages 6total releases 25most recent commit 9 months agopypi ncbi-genome-download} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52most recent commit 3 months agopypi biotite} Downloads
Jvarkit ⭐ 440
Java utilities for Bioinformatics
most recent commit 6 months ago
Jbrowse ⭐ 437
Full-featured and stable genome browser built with JavaScript and HTML5.
dependent packages 2total releases 30most recent commit a year agonpm @gmod/jbrowse} Downloads
Histolab ⭐ 315
Library for Digital Pathology Image Processing
total releases 21most recent commit 3 months ago
Awesome Biology ⭐ 313
Curated (meta)list of resources for Biology.
most recent commit 3 months ago
Bio.jl ⭐ 256
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
most recent commit 8 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Learning Bioinformatics At Home ⭐ 226
resources for learning bioinformatics
most recent commit 4 years ago
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68most recent commit 5 months agopypi pyfastx} Downloads
Deep Rules ⭐ 198
Ten Quick Tips for Deep Learning in Biology
most recent commit 2 years ago
Biosyntax ⭐ 184
Syntax highlighting for computational biology
most recent commit 3 years ago
Indra ⭐ 154
INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.
dependent packages 7total releases 29most recent commit 3 months agopypi indra} Downloads
Biosequences.jl ⭐ 141
Biological sequences for the julia language
most recent commit 3 months ago
Pydna ⭐ 140
Clone with Python! Data structures for double stranded DNA & simulation of homologous recombination, Gibson assembly, cut & paste cloning.
dependent packages 7total releases 110most recent commit 4 months agopypi pydna} Downloads
Muscle ⭐ 134
Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
most recent commit 6 months ago
Globalbioticinteractions ⭐ 114
Global Biotic Interactions provides access to existing species interaction datasets
most recent commit 3 months ago
Buddysuite ⭐ 105
Bioinformatics toolkits for manipulating sequence, alignment, and phylogenetic tree files
total releases 18most recent commit 2 years ago
Python_biologist ⭐ 101
Python Programming for Biologists
most recent commit 7 months ago
The 10 Most Depended On Bioinformatics Biology Open Source Projects
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months agopypi biotite} Downloads
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Biofsharp ⭐ 94
Open source bioinformatics and computational biology toolbox written in F#.
dependent packages 9total releases 18latest release May 11, 2022most recent commit 2 years agonuget BioFSharp} Downloads
Ncbi Genome Download ⭐ 784
Scripts to download genomes from the NCBI FTP servers
dependent packages 6total releases 25latest release July 28, 2023most recent commit 9 months agopypi ncbi-genome-download} Downloads
Tdc ⭐ 889
Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
dependent packages 4total releases 32latest release January 27, 2023most recent commit 4 months agopypi PyTDC} Downloads
Smof ⭐ 12
Explore and analyze biological sequence data
dependent packages 2total releases 12latest release July 18, 2022most recent commit a year agopypi smof} Downloads
Jbrowse ⭐ 437
Full-featured and stable genome browser built with JavaScript and HTML5.
dependent packages 2total releases 30latest release July 12, 2019most recent commit a year agonpm @gmod/jbrowse} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
The 10 Latest Releases In Bioinformatics Biology Open Source Projects
Pyfastx ⭐ 211
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
dependent packages 20total releases 68latest release November 25, 2023most recent commit 5 months agopypi pyfastx} Downloads
Cogent3 ⭐ 79
Comparative Genomics Toolkit 3
dependent packages 2total releases 18latest release September 22, 2023most recent commit 3 months agopypi cogent3} Downloads
Biotite ⭐ 515
A comprehensive library for computational molecular biology
dependent packages 21total releases 52latest release September 09, 2023most recent commit 3 months agopypi biotite} Downloads
Ncbi Genome Download ⭐ 784
Scripts to download genomes from the NCBI FTP servers
dependent packages 6total releases 25latest release July 28, 2023most recent commit 9 months agopypi ncbi-genome-download} Downloads
Tdc ⭐ 889
Therapeutics Data Commons: Artificial Intelligence Foundation for Therapeutic Science
dependent packages 4total releases 32latest release January 27, 2023most recent commit 4 months agopypi PyTDC} Downloads
Biostuff ⭐ 8
Computational biology packages for Go.
total releases 28latest release August 30, 2022most recent commit 5 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Smof ⭐ 12
Explore and analyze biological sequence data
dependent packages 2total releases 12latest release July 18, 2022most recent commit a year agopypi smof} Downloads
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