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The Top 19 Genome Bacteria Open Source Projects

Open source projects categorized as Genome Bacteria
Categories > Bacteria
Categories > Science > Genome
Snippy ⭐ 408
✂️ ⚡ Rapid haploid variant calling and core genome alignment
most recent commit 7 months ago
Gtdbtk ⭐ 383
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
dependent packages 1total releases 48most recent commit 5 months agopypi gtdbtk} Downloads
Bakta ⭐ 365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
total releases 37most recent commit 3 months ago
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6most recent commit 3 months ago
Get_homologues ⭐ 98
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
most recent commit 4 months ago
Nullarbor ⭐ 80
💾 📃 "Reads to report" for public health and clinical microbiology
most recent commit 4 years ago
Pangraph ⭐ 72
A bioinformatic toolkit to align genome assemblies into pangenome graphs
most recent commit 4 months ago
Bigsdb ⭐ 53
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
most recent commit 3 months ago
Asap ⭐ 46
A scalable bacterial genome assembly, annotation and analysis pipeline
most recent commit 2 years ago
Bactmap ⭐ 45
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
most recent commit 7 months ago
Vigen ⭐ 24
viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data
most recent commit a year ago
Socru ⭐ 23
Order and orientation of complete bacterial genomes
most recent commit 5 months ago
Mof Search ⭐ 18
BLAST-like search across all pre-2019 bacteria on ordinary laptop and desktop computers within a few hours
most recent commit 5 months ago
Bactpipe ⭐ 17
BACTpipe: An assembly and annotation pipeline for bacterial genomics
most recent commit 2 years ago
Rmap ⭐ 15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
most recent commit 6 months ago
Phastaf ⭐ 14
Identify phage regions in bacterial genomes for masking purposes
most recent commit 5 years ago
Bactaxr ⭐ 8
Bacterial taxonomy construction and evaluation in R
most recent commit 2 years ago
Dementpy ⭐ 8
A spatially explicit trait- and individual-based microbial systems modelling framework
most recent commit 2 years ago
Miniphy ⭐ 7
Phylogenetic compression of extremely large genome collections [661k ↘𝟏𝟕.𝟓𝐆𝐁, BIGSIdata ↘𝟓𝟐 𝐆𝐁]
most recent commit 4 months ago
The 3 Latest Releases In Genome Bacteria Open Source Projects
Bakta ⭐ 365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
total releases 37latest release November 29, 2023most recent commit 3 months ago
Gtdbtk ⭐ 383
GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
dependent packages 1total releases 48latest release July 11, 2022most recent commit 5 months agopypi gtdbtk} Downloads
Ppanggolin ⭐ 191
Build a partitioned pangenome graph from microbial genomes
total releases 6latest release July 15, 2018most recent commit 3 months ago
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