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The Top 23 Assembly Genome Open Source Projects

Open source projects categorized as Assembly Genome
Categories > Science > Genome
Coursera_data_structures_and_algorithms_specialization ⭐ 16
My solution to Data Structures and Algorithms Specialization (Algorithmic Toolbox; Data Structures; Algorithms on Graphs; Algorithms on Strings; Advanced Algorithms and Complexity; Genome Assembly Programming Challenge)
most recent commit 5 years ago
Tracespipe ⭐ 16
Reconstruction and analysis of viral and host genomes at multi-organ level
most recent commit 10 months ago
Mgse ⭐ 16
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
most recent commit 2 years ago
Appliedgenomics2019 ⭐ 16
Materials for Spring 2019 Applied Genomics Course
most recent commit 5 years ago
Pseudohaploid ⭐ 16
Create a pseudohaploid assembly from a partially resolved diploid assembly
most recent commit 4 years ago
Genome_painter ⭐ 15
Paint genomes with taxa-specific k-mer probabilities
most recent commit 2 years ago
Metavic ⭐ 15
Virus metagenomic pipeline for unknown host or in absence of a host genome
most recent commit 5 years ago
Segment Liftover ⭐ 15
Lifterover copy number segments in whole
total releases 22most recent commit 3 years ago
Assembly_accuracy ⭐ 15
tools for assessing the accuracy of genome assemblies
most recent commit 5 years ago
Ampril Genomes ⭐ 15
scripts for the project of seven thaliana genomes assembly
most recent commit 3 years ago
Hupan ⭐ 14
Human pan-genome analysis pipeline
most recent commit 4 years ago
Hash10x ⭐ 14
a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly
most recent commit 4 years ago
Pavfinder ⭐ 14
🔍 Post Assembly Variants Finder
most recent commit 2 years ago
Bioinformatics Tools ⭐ 14
Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files
most recent commit a year ago
Viral Assembly ⭐ 13
exploring viral genome assembly with variation graph tools
most recent commit 4 years ago
Trio_binning ⭐ 13
Programs implementing the trio-binning genome assembly method
most recent commit a year ago
Pyscaf ⭐ 12
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.
most recent commit 5 years ago
Plascope ⭐ 12
🔬 ⭕ Plasmid exploration of bacterial genomes
most recent commit 2 years ago
Bohra ⭐ 12
A pipeline for bioinformatics analysis of bacterial genomes
total releases 52most recent commit 3 years ago
Berokka ⭐ 12
🍊 💫 Trim, circularise and orient long read bacterial genome assemblies
most recent commit 5 years ago
Metaphase ⭐ 12
The software involved in the MetaPhase project, as described in G3 (http://dx.doi.org/10.1534/g3.114.011825)
most recent commit 6 years ago
Genomeqc ⭐ 12
most recent commit 3 years ago
Plws ⭐ 11
Phylogenomics from Low-coverage Whole-genome Sequencing
most recent commit 4 years ago
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