Viral Assembly
exploring viral genome assembly with variation graph tools
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Hifiasm | 443 | 5 months ago | 324 | mit | C++ | |||||
| Hifiasm: a haplotype-resolved assembler for accurate Hifi reads | ||||||||||
| Pggb | 315 | 5 months ago | 40 | mit | Shell | |||||
| the pangenome graph builder | ||||||||||
| Ppanggolin | 191 | 5 months ago | 6 | July 15, 2018 | 9 | other | Python | |||
| Build a partitioned pangenome graph from microbial genomes | ||||||||||
| Rust Mdbg | 149 | a year ago | 1 | mit | Rust | |||||
| minimizer-space de Bruijn graphs (mdBG) for whole genome assembly | ||||||||||
| Px2graph | 113 | 6 years ago | 8 | bsd-3-clause | Python | |||||
| Training code for "Pixels to Graphs by Associative Embedding" | ||||||||||
| Arcs | 86 | 7 months ago | 2 | gpl-3.0 | C++ | |||||
| 🌈Scaffold genome sequence assemblies using linked or long read sequencing data | ||||||||||
| Pygr | 84 | 9 years ago | 4 | bsd-3-clause | Python | |||||
| Python graph database framework for bioinformatics | ||||||||||
| Momi G | 81 | 5 months ago | 9 | mit | TypeScript | |||||
| Modular Multi-scale Integrated Genome Graph Browser | ||||||||||
| Minia | 65 | 8 months ago | 6 | agpl-3.0 | C++ | |||||
| Minia is a short-read assembler based on a de Bruijn graph | ||||||||||
| Cuttlefish | 64 | a year ago | 8 | bsd-3-clause | C++ | |||||
| Building the compacted de Bruijn graph efficiently from references or reads. | ||||||||||
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Graph
Assembly
Genome