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The Top 23 Analysis Pipeline Open Source Projects

Open source projects categorized as Analysis Pipeline
Categories > Code Quality > Analysis
Categories > Data Processing > Pipeline
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47most recent commit 6 months ago
Rnaseq ⭐ 718
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
most recent commit 3 months ago
Socorro ⭐ 573
Socorro is the Mozilla crash ingestion pipeline. It accepts and processes Breakpad-style crash reports. It provides analysis tools.
most recent commit 4 months ago
Scrna Seq_notes ⭐ 478
A list of scRNA-seq analysis tools
most recent commit 4 months ago
Hic_tools ⭐ 454
A collection of tools for Hi-C data analysis
most recent commit 5 months ago
Awesome Nextflow ⭐ 448
A curated list of nextflow based pipelines
most recent commit 2 years ago
Karton ⭐ 353
Distributed malware processing framework based on Python, Redis and S3.
dependent packages 11total releases 20most recent commit 4 months agopypi karton-core} Downloads
Gtex Pipeline ⭐ 317
GTEx & TOPMed data production and analysis pipelines
most recent commit 3 months ago
Bactopia ⭐ 281
A flexible pipeline for complete analysis of bacterial genomes
most recent commit 7 months ago
Snapatac ⭐ 227
Analysis Pipeline for Single Cell ATAC-seq
most recent commit 2 years ago
Augur ⭐ 217
Pipeline components for real-time phylodynamic analysis
dependent packages 1total releases 97most recent commit 3 months agopypi nextstrain-augur} Downloads
Easyamplicon ⭐ 173
Easy Amplicon data analysis pipeline
most recent commit 7 months ago
Warp ⭐ 163
WDL Analysis Research Pipelines
most recent commit 3 months ago
Ampliseq ⭐ 141
Amplicon sequencing analysis workflow using DADA2 and QIIME2
most recent commit 4 months ago
Rnaseq Workflow ⭐ 133
A repository for setting up a RNAseq workflow
most recent commit 7 years ago
Viral Ngs ⭐ 129
Viral genomics analysis pipelines
most recent commit 4 years ago
Gwas_scripts ⭐ 127
Codebook from my GWAS cookbook
most recent commit 2 years ago
Nanoseq ⭐ 122
Nanopore demultiplexing, QC and alignment pipeline
most recent commit 7 months ago
Rnafusion ⭐ 120
RNA-seq analysis pipeline for detection gene-fusions
most recent commit 4 months ago
Rnalysis ⭐ 114
RNA sequencing analysis software
total releases 43most recent commit 4 months ago
Pipeline Transcriptome De ⭐ 95
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
most recent commit a year ago
Biojupies ⭐ 94
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
most recent commit 2 years ago
Ilus ⭐ 89
A handy variant calling pipeline generator for whole-genome sequencing (WGS) and whole exom sequencing data (WES) analysis. 一个简易且全面的 WGS/WES 分析流程生成器.
total releases 13most recent commit 5 months ago
The 8 Most Depended On Analysis Pipeline Open Source Projects
Karton ⭐ 353
Distributed malware processing framework based on Python, Redis and S3.
dependent packages 11total releases 20latest release September 04, 2023most recent commit 4 months agopypi karton-core} Downloads
Npm Pipeline ⭐ 7
Analysis pipeline for npm packages
dependent packages 4total releases 2latest release October 03, 2014most recent commit 10 years agonpm npm-pipeline} Downloads
Cgat Core ⭐ 30
Core functionality of the CGAT code
dependent packages 3total releases 31latest release May 19, 2022most recent commit a year agopypi cgatcore} Downloads
Groove ⭐ 7
Query analysis pipeline framework
dependent packages 3total releases 1latest release December 02, 2021most recent commit 2 years ago
Nozzle ⭐ 55
Nozzle is a report generation toolkit for data analysis pipelines implemented in R.
dependent packages 2total releases 4latest release June 23, 2022most recent commit 8 years ago
Augur ⭐ 217
Pipeline components for real-time phylodynamic analysis
dependent packages 1total releases 97latest release November 07, 2023most recent commit 3 months agopypi nextstrain-augur} Downloads
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47latest release November 06, 2023most recent commit 6 months ago
Pynpoint ⭐ 16
Pipeline for processing and analysis of high-contrast imaging data
dependent packages 1total releases 16latest release September 21, 2023most recent commit 7 months agopypi pynpoint} Downloads
The 10 Latest Releases In Analysis Pipeline Open Source Projects
Rnalysis ⭐ 114
RNA sequencing analysis software
total releases 43latest release November 22, 2023most recent commit 4 months ago
Augur ⭐ 217
Pipeline components for real-time phylodynamic analysis
dependent packages 1total releases 97latest release November 07, 2023most recent commit 3 months agopypi nextstrain-augur} Downloads
Drake ⭐ 1,332
An R-focused pipeline toolkit for reproducibility and high-performance computing
dependent packages 1total releases 47latest release November 06, 2023most recent commit 6 months ago
Pynpoint ⭐ 16
Pipeline for processing and analysis of high-contrast imaging data
dependent packages 1total releases 16latest release September 21, 2023most recent commit 7 months agopypi pynpoint} Downloads
Karton ⭐ 353
Distributed malware processing framework based on Python, Redis and S3.
dependent packages 11total releases 20latest release September 04, 2023most recent commit 4 months agopypi karton-core} Downloads
Podpac ⭐ 43
Pipeline for Observational Data Processing Analysis and Collaboration
total releases 15latest release August 25, 2023most recent commit 4 months ago
Viper ⭐ 14
Simple, expressive pipeline syntax to transform and manipulate data with ease
total releases 3latest release March 19, 2023most recent commit 4 months ago
Paleomix ⭐ 41
Pipelines and tools for the processing of ancient and modern HTS data.
total releases 31latest release August 22, 2022most recent commit 7 months ago
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