Tmad
| Project Name | Stars | Downloads | Repos Using This | Packages Using This | Most Recent Commit | Total Releases | Latest Release | Open Issues | License | Language |
|---|---|---|---|---|---|---|---|---|---|---|
| Genrich | 158 | a year ago | 9 | mit | C | |||||
| Detecting sites of genomic enrichment | ||||||||||
| Badread | 124 | 4 months ago | 10 | gpl-3.0 | Python | |||||
| a long read simulator that can imitate many types of read problems | ||||||||||
| Instagraal | 33 | 1 | a year ago | 6 | March 21, 2019 | 4 | gpl-3.0 | Cuda | ||
| Large genome reassembly based on Hi-C data, continuation of GRAAL | ||||||||||
| Socru | 23 | 4 months ago | 3 | gpl-3.0 | Python | |||||
| Order and orientation of complete bacterial genomes | ||||||||||
| Chip Nf | 13 | 2 years ago | Nextflow | |||||||
| An automated ChIP-seq pipeline using Nextfow | ||||||||||
| Graal | 13 | 4 years ago | 8 | Python | ||||||
| (check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714) | ||||||||||
| R.4cker | 12 | 4 years ago | 42 | mit | R | |||||
| Plot2do | 11 | 3 years ago | 1 | mit | R | |||||
| A tool to assess the quality and distribution of genomic data | ||||||||||
| Snaptools | 11 | 4 years ago | 22 | September 04, 2019 | 20 | apache-2.0 | Python | |||
| A module for working with snap files in Python | ||||||||||
| Asgart | 10 | 3 years ago | gpl-3.0 | Rust | ||||||
| A genome-scale, fast, and precise segmental duplications mapping tool | ||||||||||
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