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Search results for whole slide imaging

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43 search results found

QuPath - Bioimage analysis & digital pathology

Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering

Cancer metastasis detection with neural conditional random field (NCRF)

Program for the analysis and visualization of whole-slide images in digital pathology

Tifffile ⭐ 436

Read and write TIFF files. Forked from https://pypi.org/project/tifffile

Openslide ⭐ 365

C library for reading virtual slide images

Bioformats ⭐ 358

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.

Tiatoolbox ⭐ 277

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

Dsmil Wsi ⭐ 224

DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image

Slideflow ⭐ 193

Deep learning library for digital pathology, with both Tensorflow and PyTorch support.

Camicroscope ⭐ 191

Digital pathology image viewer with support for human/machine generated annotations and markups.

Bluelight ⭐ 88

a browser-based DICOM viewer

Slideseg ⭐ 73

A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.

Cytomine Core ⭐ 73

Cytomine-Core is the main web server implementing the Cytomine API

Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "

Pathology Whole Slide Data ⭐ 69

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

Tcga_segmentation ⭐ 57

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

Compay Syntax ⭐ 48

🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

Digital Pathology Whole Slide Image Analysis Toolbox

🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images

Tissueloc ⭐ 39

Whole Slide Digital Pathology Image Tissue Localization

An open source online platform for collaborative image labeling of almost everything

Digitalhistopath ⭐ 23

Sdpc For Python ⭐ 19

Python library for processing whole slide images (WSIs) in sdpc format

Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding

Wsiprocess ⭐ 16

Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks

Implementation of DSCA: A Dual-stream Network with Cross-attention on Whole-Slide Image Pyramids for Cancer Prognosis

Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine

Cytobrowser ⭐ 14

CytoBrowser, a JavaScript and Node.js driven environment for fast and accessible collaborative online visualization, assessment, and annotation of very large microscopy images.

Qupath Chcapi Extension ⭐ 14

Extension to QuPath application adding support for reading from Google Cloud Healthcare API.

Wsisegmentation ⭐ 12

Segmenting WSIs using Deep Convolutional Neural Networks

Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.

Wsi Preprocessing ⭐ 10

Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

2d Vq Ae 2 ⭐ 10

2D Vector-Quantized Auto-Encoder for compression of Whole-Slide Images in Histopathology

Graphlsurv ⭐ 8

GraphLSurv: A Scalable Survival Prediction Network with Adaptive and Sparse Structure Learning for Histopathological Whole-Slide Images

Patolojiatlasi.github.io ⭐ 8

Patoloji Atlası

Demo_wsi_superres ⭐ 8

WSISR: Single image super-resolution for Whole slide Imaging using convolutional neural networks and self-supervised color normalization.

Lks Dataset ⭐ 7

This is the official repo for the Liver Kidney Stomach dataset introduced in the paper: SOS: Selective Objective Switch for Rapid Immunofluorescence Whole Slide Image Classification.

HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇

Labelstrip ⭐ 7

GUI wrapped around anonymise label for SVS and NDPI whole slide images

Bioimager ⭐ 6

A .NET microscopy imaging application based on Bio library. Supports various microscopes by using imported libraries & GUI automation. Supports XInput game controllers to move stage, take images, run ImageJ macros on images or Bio C# scripts.

Dicomslide ⭐ 6

Python library for reading whole slide images in DICOM format

Gleason_grade ⭐ 5

Code for gleason grading a whole slide in 1 minute or less

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Pathology Whole Slide Imaging (12)

1-43 of 43 search results

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