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12 search results found

tools for working with genome variation graphs

Modular Multi-scale Integrated Genome Graph Browser

Panaligner ⭐ 33

Long read aligner for cyclic and acyclic pangenome graphs

Parallel Sequence to Graph Alignment

Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions

Strainflair ⭐ 23

Strain-level abundances estimation in metagenomic samples using variation graphs

Graphchainer ⭐ 20

An accurate aligner of long reads to a variation graph, based on co-linear chaining

Linear-time, low-memory construction of variation graphs

Rs Gfatovcf ⭐ 12

Rust implementation of Flavia95's GFAtoVCF

RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)

Svjedi Graph ⭐ 5

SV genotyper for long reads with a variation graph

Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]

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