Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for structural biology
structural-biology
x
55 search results found
Graphein
⭐
932
Protein Graph Library
Molecularnodes
⭐
729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Biotite
⭐
515
A comprehensive library for computational molecular biology
Pdb Tools
⭐
319
A dependency-free cross-platform swiss army knife for PDB files.
Sidechainnet
⭐
256
An all-atom protein structure dataset for machine learning.
Lightdock
⭐
234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Gemmi
⭐
180
macromolecular crystallography library and utilities
Ssbio
⭐
96
A Python framework for structural systems biology
Freesasa
⭐
95
C-library for calculating Solvent Accessible Surface Areas
Atomium
⭐
92
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Pensa
⭐
77
PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
Biostructures.jl
⭐
77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
Computational Cryoem
⭐
73
A curated list of awesome computational cryo-EM methods.
Imp
⭐
64
The Integrative Modeling Platform
Ball
⭐
61
The Biochemical Algorithms Library
Equifold
⭐
59
Official code repository for EquiFold
Toolkit
⭐
57
The MPI Bioinformatics Toolkit
Vscoding Sequence
⭐
56
VSCode Extension for interactively visualising protein structure data in the editor
Ipymol
⭐
47
Control PyMOL sessions via IPython
Haddock Tools
⭐
41
Set of useful HADDOCK utility scripts
Freesasa Python
⭐
39
FreeSASA Python Module
Structural Bioinformatics
⭐
34
This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202
Bio3dview.jl
⭐
32
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
Packman
⭐
28
PACKMAN: PACKing and Motion ANalysis
Mdciao
⭐
26
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
Protein Transformer
⭐
25
Predicting protein structure through sequence modeling
Deepict
⭐
24
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
Lemon
⭐
22
A framework for rapidly mining structural information from the Protein Data Bank
Tomobear
⭐
21
TomoBEAR is a configurable and customizable modular pipeline for streamlined processing of cryo-electron tomographic data for subtomogram averaging.
Computational Cryoet
⭐
16
A curated list of awesome computational cryo-ET methods.
Mrcfile.jl
⭐
14
Read and write files and manipulate data in the MRC2014 format
Serialfib
⭐
14
A Modular Platform for Streamlining Automated Cryo-FIB Workflows
Deeprank2
⭐
14
An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
Respre
⭐
13
ResPRE is an algorithm for protein residue-residue contact-map prediction
Haddocking.github.io
⭐
13
Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
De Stress
⭐
13
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
Pmi
⭐
12
Python Modeling Interface
Funfoldesdata
⭐
12
Rosetta FunFolDes – a general framework for the computational design of functional proteins.
Schrodinger_utils
⭐
12
Various integrations to the Schrodinger ecosystem. With major interest on analysis tools for Molecular Dynamics simulations run with Desmond.
Isambard
⭐
11
Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
Zincbinddb
⭐
10
The database and API backend for ZincBind - the database of zinc binding sites
Pymissense
⭐
9
PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
Bionoinet
⭐
9
BionoiNet is a deep learning-based software to classify ligand-binding sites.
Teaching Ibioic Intro To Bioinformatics
⭐
9
Course materials for the IBioIC Introduction to Bioinformatics training course
Bioen
⭐
9
BioEn - Bayesian Inference Of ENsembles
Surfstamp Public
⭐
7
3D Printer Compatible Molecular Surface Representation (Do not clone! Everything is in the release page!)
Peppy
⭐
7
A VR app which allows creation and manipulation of dynamic models of polypeptides. Focus is fun and learning.
Hydroid
⭐
7
Python package for analyzing hydroxyl-radical footprinting experiments of DNA-protein complexes
Rnaglib
⭐
6
Datasets and analysis tools for RNA 3D and 2.5D structures.
Tisigner Reactjs
⭐
6
TISIGNER: Unleash the power of synthetic biology
Gdock
⭐
6
Protein-Protein Docking using Genetic Algorithm
Rmf
⭐
6
The library to support reading and writing of RMF files.
Unity Protein Visualization
⭐
6
Protein Visualization using Unity and C# analysis on PDB Files.
Hole2 Mdakit
⭐
5
An MDAKit implementing a Python interface for the HOLE program.
Ctfsimulation
⭐
5
A CTF Simulation Web App
1-55 of 55 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.