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Search results for sra
sra
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13 search results found
Pysradb
⭐
269
Package for fetching metadata and downloading data from SRA/ENA/GEO
Seq2science
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132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Fetchngs
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93
Pipeline to fetch metadata and raw FastQ files from public and private databases
Grabseqs
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44
A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA
Geofetch
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33
Builds a PEP from SRA or GEO accessions
Psichomics
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33
Interactive R package to quantify, analyse and visualise alternative splicing
Seqsender
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24
Automated Pipeline to Generate FTP Files and Manage Submission of Sequence Data to Public Repositories
Viruspy
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21
A pipeline for viral identification from metagenomic samples
Partie
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20
PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied annotations of the data sets can not be trusted, and so PARTIE allows automatic separation of the data.
Scfetch
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17
Access and Format Single-cell RNA-seq Datasets from Public Resources
Sars_cov_2
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15
Bioinformatics analysis of SARS-CoV-2
Tostadas
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10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
Metadatatable
⭐
5
Work on and around an interactive metadata table for project identification
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1-13 of 13 search results
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